disable containers including cache when building cache

nf-core · Feb 8, 2023 · ae480e5 · ae480e5
1 parent 9a921f3
commit ae480e5
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/conf/modules/annotate.config b/conf/modules/annotate.config
@@ -20,7 +20,7 @@ process {
         withName: 'SNPEFF_SNPEFF' {
             ext.prefix       = { "${vcf.baseName.minus(".vcf")}_snpEff" }
             ext.args         = '-nodownload -canon -v'
-            if (!params.snpeff_cache) container = { params.snpeff_genome ? "nfcore/snpeff:${params.snpeff_version}.${params.snpeff_genome}" : "nfcore/snpeff:${params.snpeff_version}.${params.genome}" }
+            if (!params.snpeff_cache && !params.download_cache) container = { params.snpeff_genome ? "nfcore/snpeff:${params.snpeff_version}.${params.snpeff_genome}" : "nfcore/snpeff:${params.snpeff_version}.${params.genome}" }
             publishDir       = [
                 [
                     mode: params.publish_dir_mode,
@@ -46,7 +46,7 @@ process {
             ].join(' ').trim() }
             // If just VEP: <vcf prefix>_VEP.ann.vcf
             ext.prefix       = { "${vcf.baseName.minus(".vcf")}_VEP.ann" }
-            if (!params.vep_cache)    container = { params.vep_genome ? "nfcore/vep:${params.vep_version}.${params.vep_genome}" : "nfcore/vep:${params.vep_version}.${params.genome}" }
+            if (!params.vep_cache && !params.download_cache)    container = { params.vep_genome ? "nfcore/vep:${params.vep_version}.${params.vep_genome}" : "nfcore/vep:${params.vep_version}.${params.genome}" }
             publishDir       = [
                 [
                     mode: params.publish_dir_mode,