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Topic version channel#99

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charles-plessy merged 30 commits intodevfrom
topicVersionChannel
Jan 27, 2026
Merged

Topic version channel#99
charles-plessy merged 30 commits intodevfrom
topicVersionChannel

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@takiifujita-ui
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PR checklist

Deleted the expression of "ch_versions = ch_versions"

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/pairgenomealign branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@takiifujita-ui takiifujita-ui changed the base branch from master to dev January 20, 2026 08:16
@takiifujita-ui takiifujita-ui marked this pull request as draft January 20, 2026 08:17
@takiifujita-ui takiifujita-ui marked this pull request as ready for review January 20, 2026 08:21
@takiifujita-ui takiifujita-ui marked this pull request as draft January 20, 2026 08:21
@takiifujita-ui takiifujita-ui marked this pull request as ready for review January 26, 2026 02:25
takiifujita-ui and others added 6 commits January 27, 2026 11:38
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
Modified expression of versions to correct wrong expression
Add back handling of `samtools_FAIDX` .sizes files
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@charles-plessy charles-plessy left a comment

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Final proofcheck by @takiifujita-ui and @charles-plessy before pushing the merge button

@charles-plessy charles-plessy merged commit 94af0c6 into dev Jan 27, 2026
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@jfy133 jfy133 mentioned this pull request Jan 29, 2026
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3 participants