Fix version reporting for all subworkflows

[jfy133]

Description of the bug

Many of the subworkflows are only reporting versions for single tools within the subworkflow.

We should update this everywhere so we take just the first version of each module within the subworfklow, but emit these for all the tools from the subworkflow itself.

First noticed in: #754

Command used and terminal output

Relevant files

No response

System information

No response