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Activate CAZyme analysis in full test #523

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Activate CAZyme analysis in full test #523

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9 changes: 7 additions & 2 deletions conf/test_full.config
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Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,8 @@ params {
amp_hmmsearch_savealignments = true
amp_hmmsearch_savedomains = true
amp_hmmsearch_savetargets = true
amp_skip_amplify = true // takes too long
amp_skip_amplify = true
// takes too long
Comment on lines +30 to +31
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@jasmezz jasmezz Mar 30, 2026

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Suggested change
amp_skip_amplify = true
// takes too long
amp_skip_amplify = true // takes too long

Unless there is a recommendation to have comment in separate line?


// ARG params
run_arg_screening = true
Expand All @@ -40,9 +41,13 @@ params {
bgc_hmmsearch_savealignments = true
bgc_hmmsearch_savetargets = true
bgc_hmmsearch_savedomains = true
bgc_skip_deepbgc = true // takes too long
bgc_skip_deepbgc = true
// takes too long
Comment on lines +44 to +45
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@jasmezz jasmezz Mar 30, 2026

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Suggested change
bgc_skip_deepbgc = true
// takes too long
bgc_skip_deepbgc = true // takes too long

bgc_mincontiglength = 1000
bgc_savefilteredcontigs = true
bgc_skip_deepbgc = true
bgc_antismash_contigminlength = 1000

// CAZyme params
run_cazyme_screening = true
}
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