Json schema improvements #1550
andreirieci.yml
on: pull_request
Choose nextflow versions to test against depending on target branch
0s
Matrix: test
Annotations
32 errors and 67 warnings
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Run pipeline with test data (24.10.4 | test_minimal | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (latest-everything | test_minimal | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (24.10.4 | test_bakta | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (latest-everything | test_bgc_pyrodigal | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (24.10.4 | test_bgc_pyrodigal | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (latest-everything | test_bakta | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (24.10.4 | test_prokka | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (latest-everything | test_prokka | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (latest-everything | test_bgc_prokka | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (24.10.4 | test_bgc_bakta | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (24.10.4 | test_bgc_prokka | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (latest-everything | test_bgc_bakta | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (24.10.4 | test | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (24.10.4 | test_taxonomy_prokka | docker)
Process completed with exit code 1.
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Run pipeline with test data (24.10.4 | test_taxonomy_prokka | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (24.10.4 | test_taxonomy_prokka | docker)
Process completed with exit code 100.
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Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)
Process completed with exit code 100.
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Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)
Process completed with exit code 1.
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Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (latest-everything | test | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)
Process completed with exit code 1.
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Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)
Process completed with exit code 100.
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Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (24.10.4 | test_taxonomy_bakta | docker)
Process completed with exit code 100.
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Run pipeline with test data (24.10.4 | test_taxonomy_bakta | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (24.10.4 | test_taxonomy_bakta | docker)
Process completed with exit code 1.
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Run pipeline with test data (24.10.4 | test_taxonomy_pyrodigal | docker)
System.IO.IOException: No space left on device : '/home/runner/_diag/Worker_20250325-180406-utc.log'
at System.IO.RandomAccess.WriteAtOffset(SafeFileHandle handle, ReadOnlySpan`1 buffer, Int64 fileOffset)
at System.IO.StreamWriter.Flush(Boolean flushStream, Boolean flushEncoder)
at System.Diagnostics.TextWriterTraceListener.Flush()
at GitHub.Runner.Common.HostTraceListener.WriteHeader(String source, TraceEventType eventType, Int32 id)
at System.Diagnostics.TraceSource.TraceEvent(TraceEventType eventType, Int32 id, String message)
at GitHub.Runner.Worker.Worker.RunAsync(String pipeIn, String pipeOut)
at GitHub.Runner.Worker.Program.MainAsync(IHostContext context, String[] args)
System.IO.IOException: No space left on device : '/home/runner/_diag/Worker_20250325-180406-utc.log'
at System.IO.RandomAccess.WriteAtOffset(SafeFileHandle handle, ReadOnlySpan`1 buffer, Int64 fileOffset)
at System.IO.StreamWriter.Flush(Boolean flushStream, Boolean flushEncoder)
at System.Diagnostics.TextWriterTraceListener.Flush()
at GitHub.Runner.Common.HostTraceListener.WriteHeader(String source, TraceEventType eventType, Int32 id)
at System.Diagnostics.TraceSource.TraceEvent(TraceEventType eventType, Int32 id, String message)
at GitHub.Runner.Common.Tracing.Error(Exception exception)
at GitHub.Runner.Worker.Program.MainAsync(IHostContext context, String[] args)
Unhandled exception. System.IO.IOException: No space left on device : '/home/runner/_diag/Worker_20250325-180406-utc.log'
at System.IO.RandomAccess.WriteAtOffset(SafeFileHandle handle, ReadOnlySpan`1 buffer, Int64 fileOffset)
at System.IO.StreamWriter.Flush(Boolean flushStream, Boolean flushEncoder)
at System.Diagnostics.TextWriterTraceListener.Flush()
at System.Diagnostics.TraceSource.Flush()
at GitHub.Runner.Common.Tracing.Dispose(Boolean disposing)
at GitHub.Runner.Common.Tracing.Dispose()
at GitHub.Runner.Common.TraceManager.Dispose(Boolean disposing)
at GitHub.Runner.Common.TraceManager.Dispose()
at GitHub.Runner.Common.HostContext.Dispose(Boolean disposing)
at GitHub.Runner.Common.HostContext.Dispose()
at GitHub.Runner.Worker.Program.Main(String[] args)
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Run pipeline with test data (latest-everything | test_taxonomy_pyrodigal | docker)
System.IO.IOException: No space left on device : '/home/runner/_diag/Worker_20250325-180417-utc.log'
at System.IO.RandomAccess.WriteAtOffset(SafeFileHandle handle, ReadOnlySpan`1 buffer, Int64 fileOffset)
at System.IO.StreamWriter.Flush(Boolean flushStream, Boolean flushEncoder)
at System.Diagnostics.TextWriterTraceListener.Flush()
at GitHub.Runner.Common.HostTraceListener.WriteHeader(String source, TraceEventType eventType, Int32 id)
at System.Diagnostics.TraceSource.TraceEvent(TraceEventType eventType, Int32 id, String message)
at GitHub.Runner.Worker.Worker.RunAsync(String pipeIn, String pipeOut)
at GitHub.Runner.Worker.Program.MainAsync(IHostContext context, String[] args)
System.IO.IOException: No space left on device : '/home/runner/_diag/Worker_20250325-180417-utc.log'
at System.IO.RandomAccess.WriteAtOffset(SafeFileHandle handle, ReadOnlySpan`1 buffer, Int64 fileOffset)
at System.IO.StreamWriter.Flush(Boolean flushStream, Boolean flushEncoder)
at System.Diagnostics.TextWriterTraceListener.Flush()
at GitHub.Runner.Common.HostTraceListener.WriteHeader(String source, TraceEventType eventType, Int32 id)
at System.Diagnostics.TraceSource.TraceEvent(TraceEventType eventType, Int32 id, String message)
at GitHub.Runner.Common.Tracing.Error(Exception exception)
at GitHub.Runner.Worker.Program.MainAsync(IHostContext context, String[] args)
Unhandled exception. System.IO.IOException: No space left on device : '/home/runner/_diag/Worker_20250325-180417-utc.log'
at System.IO.RandomAccess.WriteAtOffset(SafeFileHandle handle, ReadOnlySpan`1 buffer, Int64 fileOffset)
at System.IO.StreamWriter.Flush(Boolean flushStream, Boolean flushEncoder)
at System.Diagnostics.TextWriterTraceListener.Flush()
at System.Diagnostics.TraceSource.Flush()
at GitHub.Runner.Common.Tracing.Dispose(Boolean disposing)
at GitHub.Runner.Common.Tracing.Dispose()
at GitHub.Runner.Common.TraceManager.Dispose(Boolean disposing)
at GitHub.Runner.Common.TraceManager.Dispose()
at GitHub.Runner.Common.HostContext.Dispose(Boolean disposing)
at GitHub.Runner.Common.HostContext.Dispose()
at GitHub.Runner.Worker.Program.Main(String[] args)
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Run pipeline with test data (24.10.4 | test_preannotated_bgc | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (24.10.4 | test_preannotated | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (latest-everything | test_preannotated | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (latest-everything | test_preannotated_bgc | docker)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run pipeline with test data (24.10.4 | test_minimal | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_minimal | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_minimal | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (latest-everything | test_minimal | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_minimal | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_minimal | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (24.10.4 | test_bakta | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_bakta | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_bakta | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (latest-everything | test_bgc_pyrodigal | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_bgc_pyrodigal | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_bgc_pyrodigal | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (24.10.4 | test_bgc_pyrodigal | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_bgc_pyrodigal | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_bgc_pyrodigal | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (latest-everything | test_bakta | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_bakta | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_bakta | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (24.10.4 | test_prokka | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_prokka | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_prokka | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (latest-everything | test_prokka | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_prokka | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_prokka | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (latest-everything | test_bgc_prokka | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_bgc_prokka | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_bgc_prokka | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (24.10.4 | test_bgc_bakta | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_bgc_bakta | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_bgc_bakta | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (24.10.4 | test_bgc_prokka | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_bgc_prokka | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_bgc_prokka | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (latest-everything | test_bgc_bakta | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_bgc_bakta | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_bgc_bakta | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (24.10.4 | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (24.10.4 | test_taxonomy_prokka | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_taxonomy_prokka | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_taxonomy_prokka | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (24.10.4 | test_taxonomy_bakta | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_taxonomy_bakta | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_taxonomy_bakta | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (latest-everything | test_taxonomy_pyrodigal | docker)
You are running out of disk space. The runner will stop working when the machine runs out of disk space. Free space left: 1 MB
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Run pipeline with test data (24.10.4 | test_preannotated_bgc | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_preannotated_bgc | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_preannotated_bgc | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (24.10.4 | test_preannotated | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_preannotated | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (24.10.4 | test_preannotated | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (latest-everything | test_preannotated | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_preannotated | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_preannotated | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run pipeline with test data (latest-everything | test_preannotated_bgc | docker)
The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_preannotated_bgc | docker)
The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...
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Run pipeline with test data (latest-everything | test_preannotated_bgc | docker)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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