nf-core CI

Merge pull request #470 from nf-core/switch-to-self-hosted-runners #1549

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Triggered via push March 25, 2025 17:45

jfy133

dev

Status Failure

Total duration 52m 41s

Artifacts –

ci.yml

on: push

Choose nextflow versions to test against depending on target branch

Matrix: test

Annotations

8 errors and 49 warnings

Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)

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Run pipeline with test data (24.10.4 | test_taxonomy_prokka | docker)

Process completed with exit code 1.

Run pipeline with test data (24.10.4 | test_taxonomy_prokka | docker)

Process completed with exit code 100.

Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)

Process completed with exit code 100.

Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)

Process completed with exit code 1.

Run pipeline with test data (24.10.4 | test_taxonomy_bakta | docker)

Process completed with exit code 100.

Run pipeline with test data (24.10.4 | test_taxonomy_bakta | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_minimal | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_minimal | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_minimal | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_minimal | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_prokka | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_prokka | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_bakta | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_bakta | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_bakta | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_bakta | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_prokka | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_prokka | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_bgc_pyrodigal | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_bgc_pyrodigal | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_bgc_pyrodigal | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_bgc_pyrodigal | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_bgc_prokka | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_bgc_prokka | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_bgc_bakta | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_bgc_bakta | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_bgc_bakta | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_bgc_bakta | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_bgc_prokka | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_bgc_prokka | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)

You are running out of disk space. The runner will stop working when the machine runs out of disk space. Free space left: 54 MB

Run pipeline with test data (24.10.4 | test_taxonomy_prokka | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_taxonomy_prokka | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_preannotated | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_preannotated | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_taxonomy_bakta | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_taxonomy_bakta | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_preannotated | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_preannotated | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_preannotated_bgc | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_preannotated_bgc | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_preannotated_bgc | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_preannotated_bgc | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_taxonomy_pyrodigal | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (24.10.4 | test_taxonomy_pyrodigal | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_taxonomy_pyrodigal | docker)

The command [sudo apt-get remove -y '^mongodb-.*' --fix-missing] failed to complete successfully. Proceeding...

Run pipeline with test data (latest-everything | test_taxonomy_pyrodigal | docker)

The command [sudo apt-get remove -y azure-cli google-chrome-stable firefox powershell mono-devel libgl1-mesa-dri --fix-missing] failed to complete successfully. Proceeding...