CI: Switch CI to pathogen-repo-ci workflow
#70
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See nextstrain/.github#94 for context
The ingest workflow current runs in <1 minute so I figured it'd be nice to add as an additional check in the GH Action CI workflow. If the ingest workflow ever runs for too long, we should figure out a way to subset the ingest data. The CI build config includes a bogus key because Snakemake requires the config file to have at least one top level key. Previous CI run without the bogus key ran into an error¹ ``` snakemake.exceptions.WorkflowError: Config file must be given as JSON or YAML with keys at top level. ``` ¹ <https://github.com/nextstrain/zika/actions/runs/9948628997/job/27483549394#step:9:17>
4 tasks
genehack
approved these changes
Jul 16, 2024
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Description of proposed changes
See nextstrain/.github#94 for context.
The ingest workflow runs in <1 minute so I figured it'd be nice
to add as an additional check in the GH Action CI workflow.
If the ingest workflow ever runs for too long, we should figure out a
way to subset the ingest data.
The ingest CI build config includes a bogus key because Snakemake requires the
config file to have at least one top level key.
Checklist