Update upload docs

Since "defaults/config.yaml" is always loaded by default, update the upload instructions Co-authored-by: Jover Lee <joverlee521@gmail.com>
nextstrain · Mar 15, 2024 · b45b7b9 · b45b7b9
1 parent cee62cf
commit b45b7b9
Showing 1 changed file with 6 additions and 1 deletion.
diff --git a/ingest/README.md b/ingest/README.md
@@ -31,7 +31,12 @@ This will produce two files (within the `ingest` directory):
 Run the complete ingest pipeline and upload results to AWS S3 with
 
 ```sh
-nextstrain build . --configfiles defaults/config.yaml build-defaults/nextstrain-automation/config.yaml
+nextstrain build \
+    --env AWS_ACCESS_KEY_ID \
+    --env AWS_SECRET_ACCESS_KEY \
+    . \
+        upload_all \
+        --configfile build-configs/nextstrain-automation/config.yaml
 ```
 
 ### Adding new sequences not from GenBank