For CI config files, we will use the directory "build-configs" instea…

…d of "profiles".

This is consistent with the pathogen-repo-guide.

https://github.com/nextstrain/pathogen-repo-guide/tree/5509de0e315eb6acae513d2df4dfab874ff289b5/phylogenetic/build-configs/ci

However, note that the `ingest/profiles` does not need to be renamed because
it's actually using the Snakemake Profiles feature.

https://github.com/snakemake-profiles/doc

.github/workflows/ci.yaml

@@ -18,7 +18,7 @@ jobs:
       run: |
         nextstrain build \
           phylogenetic \
-          --configfile profiles/ci/profiles_config.yaml
+          --configfile build-configs/ci/profiles_config.yaml
       artifact-name: output-${{ matrix.runtime }}
       artifact-paths: |
         phylogenetic/auspice/

phylogenetic/build-configs/ci/profiles_config.yaml

@@ -0,0 +1,2 @@
+custom_rules:
+  - build-configs/ci/copy_example_data.smk