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Elevate lineage XDV.1 as clade 24D and lineage KP.3.1.1 as clade 23E #1149

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merged 4 commits into from
Sep 20, 2024
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Elevate lineage XDV.1 as clade 24D and lineage KP.3.1.1 as clade 23E #1149

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735cd6a
Elevate lineage XDV.1 as clade 24D
trvrb Aug 25, 2024
4e50655
Elevate lineage KP.3.1.1 as clade 24E
trvrb Sep 12, 2024
2da22ee
Use earlier dates in clade_emergence_data to avoid false positives
corneliusroemer Sep 18, 2024
d8dd470
Update defaults/clade_emergence_dates.tsv
corneliusroemer Sep 18, 2024
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2 changes: 2 additions & 0 deletions defaults/clade_display_names.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -41,3 +41,5 @@
24A: 24A (JN.1)
24B: 24B (JN.1.11.1)
24C: 24C (KP.3)
24D: 24D (XDV.1)
24E: 24E (KP.3.1.1)
2 changes: 2 additions & 0 deletions defaults/clade_emergence_dates.tsv
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Expand Up @@ -43,3 +43,5 @@ Nextstrain_clade first_sequence
24A 2023-07-01
24B 2023-11-01
24C 2023-12-01
24D 2024-01-01
24E 2023-12-01
2 changes: 2 additions & 0 deletions defaults/clade_hierarchy.tsv
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Expand Up @@ -41,3 +41,5 @@ clade parent WHO
24A 23I Omicron
24B 24A Omicron
24C 24B Omicron
24D 21L Omicron
24E 24C Omicron
11 changes: 11 additions & 0 deletions defaults/clades.tsv
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Expand Up @@ -233,3 +233,14 @@ clade gene site alt

24C clade 24B
24C nuc 23039 G

24D clade 21L
24D nuc 1170 T
24D nuc 11572 T
24D nuc 12473 T
24D nuc 15939 C

24E clade 24C
24E nuc 13121 T
24E nuc 15372 T
24E nuc 19722 G
2 changes: 2 additions & 0 deletions defaults/color_ordering.tsv
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Expand Up @@ -34041,6 +34041,8 @@ clade_membership 23I (BA.2.86)
clade_membership 24A (JN.1)
clade_membership 24B (JN.1.11.1)
clade_membership 24C (KP.3)
clade_membership 24D (XDV.1)
clade_membership 24E (KP.3.1.1)

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