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Commits on Dec 20, 2024

• Revert "Use weighted sampling for recent samples in global builds" (#1168) due to unexpected 3x reduction in recent sample size

  corneliusroemer

  authored
  20f5fc3

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Commits on Nov 16, 2024

• Use weighted sampling for recent samples in global builds

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  victorlin

  committed
  941613b

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Commits on Oct 23, 2024

• nextstrain_profiles: Remove unused use_nextalign param

  Show description for a2dfb6d
  joverlee521

  committed
  a2dfb6d

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Commits on Oct 3, 2024

• Use ISO duration format for clade recency

  Show description for 0bd8251
  victorlin

  committed
  0bd8251

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• Apply clade recency to open and 21L builds

  

  trvrb

  authored and

  victorlin

  committed
  5698fcc

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• Require "default" key when setting default clade_recency

  Show description for db97a2b
  

  trvrb

  authored and

  victorlin

  committed
  db97a2b

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• assign-colors: use _get_clade_recency_argument

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  trvrb

  authored and

  victorlin

  committed
  40e8689

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• Allow build-specific clade_recency

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  trvrb

  authored and

  victorlin

  committed
  ad28e14

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• Merge pull request #1130 from nextstrain/build-specific-narrow-bandwidth

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  trvrb

  authored
  faa85a7

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Commits on Oct 1, 2024

• Merge pull request #1154: gisaid/21L: Use only the 21L sequence from references

  victorlin

  authored
  bc7652a

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• Use only the 21L sequence from references

  Show description for 567279a
  victorlin

  committed
  567279a

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Commits on Sep 30, 2024

• Use population-based weighted sampling for global builds

  Show description for ae764bb
  victorlin

  committed
  ae764bb

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• Use population-based weighted sampling for other regional builds

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  victorlin

  committed
  d6de734

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Commits on Sep 27, 2024

• Specify build defaults with "default" key

  Show description for 6458357
  trvrb

  committed
  6458357

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Commits on Sep 26, 2024

• Remove recent_days_to_censor from GISAID/21L and open builds

  Show description for 05b4f0f
  trvrb

  committed
  05b4f0f

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• Allow build-specific --narrow-bandwidth param in frequencies

  Show description for 3d8bed9
  trvrb

  committed
  3d8bed9

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Commits on Aug 26, 2024

• Use population-based weighted sampling for 21L Asia builds

  Show description for 8a002b4
  victorlin

  committed
  8a002b4

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• Simplify Asia subsampling scheme names

  Show description for 0599b18
  victorlin

  committed
  0599b18

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• Remove outdated comment on division grouping

  Show description for ad963cf
  victorlin

  committed
  ad963cf

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• Fix Asia 1m/2m temporal grouping

  Show description for cca31b4
  victorlin

  committed
  cca31b4

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Commits on Aug 22, 2024

• Use population-based weighted sampling for Asia builds

  Show description for bc3f69e
  victorlin

  committed
  bc3f69e

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Commits on Jul 3, 2024

• Remove rebuild_country.yml + nextstrain_profiles/nextstrain-country

  Show description for 893470f
  joverlee521

  committed
  893470f

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Commits on Jul 1, 2024

• Trim reuse text

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  victorlin

  and

  trvrb

  committed
  e2b9c94

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Commits on May 1, 2024

• Group by week for 1m/2m Asia builds

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  victorlin

  committed
  067fc5e

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Commits on Mar 11, 2024

• Fix bug in footer markdown display

  trvrb

  committed
  2bb77f6

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Commits on Mar 9, 2024

• Revise page footer

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  trvrb

  committed
  7af774d

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• Fix traits and frequencies for reference builds

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  trvrb

  committed
  f442542

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Commits on Aug 9, 2023

• Remove AUGUR_RECURSION_LIMIT

  Show description for 220ae2e
  joverlee521

  committed
  220ae2e

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Commits on Jun 30, 2023

• Add 100k open builds (subsamples)

  Show description for 731558a
  jameshadfield

  committed
  731558a

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Commits on Jun 29, 2023

• Move 100k inputs to zst

  Show description for 831bfe4
  jameshadfield

  committed
  831bfe4

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Commits on Jun 15, 2023

• Tweak global subsampling targets

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  trvrb

  committed
  0da5ed3

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• Update subsampling for region Asia

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  trvrb

  committed
  92f8196

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Commits on Jun 14, 2023

• Update global subsampling

  Show description for 9fd01c6
  trvrb

  committed
  9fd01c6

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Commits on Jun 8, 2023

• Update Open data source & licensing

  Show description for 20fc0a3
  

  emmahodcroft

  and

  tsibley

  committed
  20fc0a3

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Commits on Apr 16, 2023

• Fix typo in 21L build

  Show description for 9344d59
  trvrb

  committed
  9344d59

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