Use centralized fetch-from-ncbi-entrez

That script is based on fetch-genbank.py with some backwards-compatible improvements¹. ¹ nextstrain/ingest@1eb8b30...22775b0
nextstrain · Aug 18, 2023 · 7f5e143 · 7f5e143
1 parent 80fc4c5
commit 7f5e143
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diff --git a/ingest/ingest.smk b/ingest/ingest.smk
@@ -6,7 +6,7 @@ rule fetch_genbank:
     retries: 1  # Requires snakemake 7.7.0 or later
     shell:
         """
-        ingest/scripts/fetch-genbank.py --term {params.term:q} --output {output.genbank}
+        ingest/vendored/fetch-from-ncbi-entrez --term {params.term:q} --output {output.genbank}
         """
 
 rule parse_genbank:

diff --git a/ingest/scripts/fetch-genbank.py b/ingest/scripts/fetch-genbank.py