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Both fixes up the country field and adds region. I chose not to extract the division level information (sometimes provided via `country=<country>:<division>`) as it was rare across the dataset.
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# Adapted from https://github.com/nextstrain/ncov-ingest/blob/be874967dbefba13290610a9fdbb3d0603bfd044/source-data/gisaid_geoLocationRules.tsv | ||
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*/Netherlands/*/* Europe/Netherlands/*/* | ||
*/Netherlans/*/* Europe/Netherlans/*/* | ||
*/The Netherlands/*/* Europe/The Netherlands/*/* | ||
*/France/*/* Europe/France/*/* | ||
*/Germany/*/* Europe/Germany/*/* | ||
*/Belgium/*/* Europe/Belgium/*/* | ||
*/Switzerland/*/* Europe/Switzerland/*/* | ||
*/Russia/*/* Europe/Russia/*/* | ||
*/Hungary/*/* Europe/Hungary/*/* | ||
*/United Kingdom/*/* Europe/United Kingdom/*/* | ||
*/Czech Republic/*/* Europe/Czech Republic/*/* | ||
*/Crimea/*/* Europe/Crimea/*/* | ||
*/Spain/*/* Europe/Spain/*/* | ||
*/Sweden/*/* Europe/Sweden/*/* | ||
*/Poland/*/* Europe/Poland/*/* | ||
*/Italy/*/* Europe/Italy/*/* | ||
*/Finland/*/* Europe/Finland/*/* | ||
*/Serbia/*/* Europe/Serbia/*/* | ||
*/Austria/*/* Europe/Austria/*/* | ||
*/Romania/*/* Europe/Romania/*/* | ||
*/Bosnia and Herzegovina/*/* Europe/Bosnia and Herzegovina/*/* | ||
*/Greece/*/* Europe/Greece/*/* | ||
*/North Macedonia/*/* Europe/North Macedonia/*/* | ||
*/Moldova/*/* Europe/Moldova/*/* | ||
*/Norway/*/* Europe/Norway/*/* | ||
*/Lithuania/*/* Europe/Lithuania/*/* | ||
*/Ukraine/*/* Europe/Ukraine/*/* | ||
*/Slovakia/*/* Europe/Slovakia/*/* | ||
*/Denmark/*/* Europe/Denmark/*/* | ||
*/Ireland/*/* Europe/Ireland/*/* | ||
*/Albania/*/* Europe/Albania/*/* | ||
*/Portugal/*/* Europe/Portugal/*/* | ||
*/Macedonia/*/* Europe/Macedonia/*/* | ||
*/Belarus/*/* Europe/Belarus/*/* | ||
*/Blegium/*/* Europe/Blegium/*/* | ||
*/Country/*/* Europe/Country/*/* | ||
*/Croatia/*/* Europe/Croatia/*/* | ||
*/Estonia/*/* Europe/Estonia/*/* | ||
*/Bulgaria/*/* Europe/Bulgaria/*/* | ||
*/Liechtenstein/*/* Europe/Liechtenstein/*/* | ||
*/Romaina/*/* Europe/Romaina/*/* | ||
*/England/*/* Europe/England/*/* | ||
*/Belgique/*/* Europe/Belgique/*/* | ||
*/Republic of Moldova/*/* Europe/Republic of Moldova/*/* | ||
*/Slovaia/*/* Europe/Slovaia/*/* | ||
*/Swizterland/*/* Europe/Swizterland/*/* | ||
*/Turkey/*/* Europe/Turkey/*/* | ||
*/Bosni and Herzegovina/*/* Europe/Bosni and Herzegovina/*/* | ||
*/Brazil/*/* Europe/Brazil/*/* | ||
*/Faroe Islands/*/* Europe/Faroe Islands/*/* | ||
*/Slovenia/*/* Europe/Slovenia/*/* | ||
*/Kosovo/*/* Europe/Kosovo/*/* | ||
*/Coatia/*/* Europe/Coatia/*/* | ||
*/Israel/*/* Europe/Israel/*/* | ||
*/Guadeloupe/*/* Europe/Guadeloupe/*/* | ||
*/Serbiapozarevac/*/* Europe/Serbiapozarevac/*/* | ||
*/Andorre/*/* Europe/Andorre/*/* | ||
*/Montenegro/*/* Europe/Montenegro/*/* | ||
*/Italia/*/* Europe/Italia/*/* | ||
*/Algeria/*/* Europe/Algeria/*/* | ||
*/Armenia/*/* Europe/Armenia/*/* | ||
*/United Kindgom/*/* Europe/United Kindgom/*/* | ||
*/Slovak Republic/*/* Europe/Slovak Republic/*/* | ||
*/Czechrepublic/*/* Europe/Czech Republic/*/* | ||
*/Canary Islands/*/* Europe/Canary Islands/*/* | ||
*/Luxembourg/*/* Europe/Luxembourg/*/* | ||
*/Iceland/*/* Europe/Iceland/*/* | ||
*/Latvia/*/* Europe/Latvia/*/* | ||
*/Greenland/*/* Europe/Greenland/*/* | ||
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*/Taiwan/*/* Asia/Taiwan/*/* | ||
*/China/*/* Asia/China/*/* | ||
*/South Korea/*/* Asia/South Korea/*/* | ||
*/Kuwait/*/* Asia/Kuwait/*/* | ||
*/Vietnam/*/* Asia/Vietnam/*/* | ||
*/Pakistan/*/* Asia/Pakistan/*/* | ||
*/Israel/*/* Asia/Israel/*/* | ||
*/India/*/* Asia/India/*/* | ||
*/Bangladesh/*/* Asia/Bangladesh/*/* | ||
*/Thailand/*/* Asia/Thailand/*/* | ||
*/Oman/*/* Asia/Oman/*/* | ||
*/Bahrain/*/* Asia/Bahrain/*/* | ||
*/Philippines/*/* Asia/Philippines/*/* | ||
*/Indonesia/*/* Asia/Indonesia/*/* | ||
*/Sri Lanka/*/* Asia/Sri Lanka/*/* | ||
*/Palestine/*/* Asia/Palestine/*/* | ||
*/Iran/*/* Asia/Iran/*/* | ||
*/Viet Nam/*/* Asia/Vietnam/*/* | ||
*/Saudi Arabia/*/* Asia/Saudi Arabia/*/* | ||
*/Malaysia/*/* Asia/Malaysia/*/* | ||
*/Bangaldesh/*/* Asia/Bangaldesh/*/* | ||
*/Georgia/*/* Asia/Georgia/*/* | ||
*/Bangladeah/*/* Asia/Bangladeah/*/* | ||
*/Japan/*/* Asia/Japan/*/* | ||
*/Lebanon/*/* Asia/Lebanon/*/* | ||
*/United Arab Emirates/*/* Asia/United Arab Emirates/*/* | ||
*/Kazakhstan/*/* Asia/Kazakhstan/*/* | ||
*/Kazkahstan/*/* Asia/Kazkahstan/*/* | ||
*/Uzbekistan/*/* Asia/Uzbekistan/*/* | ||
*/Nepal/*/* Asia/Nepal/*/* | ||
*/West Bank/*/* Asia/West Bank/*/* | ||
*/Myanmar/*/* Asia/Myanmar/*/* | ||
*/Iraq/*/* Asia/Iraq/*/* | ||
*/Israel;/*/* Asia/Israel;/*/* | ||
*/Qatar/*/* Asia/Qatar/*/* | ||
*/Maldives/*/* Asia/Maldives/*/* | ||
*/Srilanka/*/* Asia/Srilanka/*/* | ||
*/Sultanate of Oman/*/* Asia/Sultanate of Oman/*/* | ||
*/Guam/*/* Asia/Guam/*/* | ||
*/Cyprus/*/* Asia/Cyprus/*/* | ||
*/Syria/*/* Asia/Syria/*/* | ||
*/Afghanistan/*/* Asia/Afghanistan/*/* | ||
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*/Mongolia/*/* Asia/Mongolia/*/* | ||
*/Hong Kong/*/* Asia/Hong Kong/*/* | ||
*/Cambodia/*/* Asia/Cambodia/*/* | ||
*/Laos/*/* Asia/Laos/*/* | ||
*/Kyrgyzstan/*/* Asia/Kyrgyzstan/*/* | ||
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*/Mexico/*/* North America/Mexico/*/* | ||
*/USA/*/* North America/USA/*/* | ||
*/Costa Rica/*/* North America/Costa Rica/*/* | ||
*/Panama/*/* North America/Panama/*/* | ||
*/El Salvador/*/* North America/El Salvador/*/* | ||
*/Canada/*/* North America/Canada/*/* | ||
*/Puerto Rico/*/* North America/Puerto Rico/*/* | ||
*/Caribbean/*/* North America/Caribbean/*/* | ||
*/Brazil/*/* North America/Brazil/*/* | ||
*/Dominican Republic/*/* North America/Dominican Republic/*/* | ||
*/Saint Barthelemy/*/* North America/Saint Barthelemy/*/* | ||
*/Saint Barthélemy/*/* North America/Saint Barthélemy/*/* | ||
*/St. Lucia/*/* North America/St. Lucia/*/* | ||
*/Cayman Islands/*/* North America/Cayman Islands/*/* | ||
*/British Virgin Islands/*/* North America/British Virgin Islands/*/* | ||
*/México/*/* North America/Mexico/*/* | ||
*/Trinidad and Tobago/*/* North America/Trinidad and Tobago/*/* | ||
*/Martinique/*/* North America/Martinique/*/* | ||
*/French Guiana/*/* North America/French Guiana/*/* | ||
*/Guam/*/* North America/Guam/*/* | ||
*/Honduras/*/* North America/Honduras/*/* | ||
*/Guatemala/*/* North America/Guatemala/*/* | ||
*/Turks and Caicos Islands/*/* North America/Turks and Caicos Islands/*/* | ||
*/Guadeloupe/*/* North America/Guadeloupe/*/* | ||
*/Anguilla/*/* North America/Anguilla/*/* | ||
*/Barbados/*/* North America/Barbados/*/* | ||
*/Dominica/*/* North America/Dominica/*/* | ||
*/Grenada/*/* North America/Grenada/*/* | ||
*/Jamaica/*/* North America/Jamaica/*/* | ||
*/Saint Kitts and Nevis/*/* North America/Saint Kitts and Nevis/*/* | ||
*/Montserrat/*/* North America/Montserrat/*/* | ||
*/Saint Lucia/*/* North America/Saint Lucia/*/* | ||
*/Saint Vincent and the Grenadines/*/* North America/Saint Vincent and the Grenadines/*/* | ||
*/The Bahamas/*/* North America/The Bahamas/*/* | ||
*/Bahamas/*/* North America/Bahamas/*/* | ||
*/U.S. Virgin Islands/*/* North America/U.S. Virgin Islands/*/* | ||
*/Belize/*/* North America/Belize/*/* | ||
*/Haiti/*/* North America/Haiti/*/* | ||
*/Cuba/*/* North America/Cuba/*/* | ||
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*/Nicaragua/*/* North America/Nicaragua/*/* | ||
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*/Brazil/*/* South America/Brazil/*/* | ||
*/Argentina/*/* South America/Argentina/*/* | ||
*/Ecuador/*/* South America/Ecuador/*/* | ||
*/Chile/*/* South America/Chile/*/* | ||
*/Colombia/*/* South America/Colombia/*/* | ||
*/Peru/*/* South America/Peru/*/* | ||
*/St Eustatius/*/* South America/St Eustatius/*/* | ||
*/Trinidad/*/* South America/Trinidad/*/* | ||
*/Uruguay/*/* South America/Uruguay/*/* | ||
*/Bolivia/*/* South America/Bolivia/*/* | ||
*/Guyane Francaise/*/* South America/Guyane Francaise/*/* | ||
*/French Guiana/*/* South America/French Guiana/*/* | ||
*/Guyane/*/* South America/Guyane/*/* | ||
*/Grenada/*/* South America/Grenada/*/* | ||
*/Guyana/*/* South America/Guyana/*/* | ||
*/Trinidad and Tobago/*/* South America/Trinidad and Tobago/*/* | ||
*/Paraguay/*/* South America/Paraguay/*/* | ||
*/Antigua/*/* South America/Antigua/*/* | ||
*/Anguilla/*/* South America/Anguilla/*/* | ||
*/British Virgin Islands/*/* South America/British Virgin Islands/*/* | ||
*/Bermuda/*/* South America/Bermuda/*/* | ||
*/Saint Lucia/*/* South America/Saint Lucia/*/* | ||
*/Martinique/*/* South America/Martinique/*/* | ||
*/Saint Vincent and the Grenadines/*/* South America/Saint Vincent and the Grenadines/*/* | ||
*/Barbados/*/* South America/Barbados/*/* | ||
*/Jamaica/*/* South America/Jamaica/*/* | ||
*/Montserrat/*/* South America/Montserrat/*/* | ||
*/Venezuela/*/* South America/Venezuela/*/* | ||
*/Dominica/*/* South America/Dominica/*/* | ||
*/Turks and Caicos Islands/*/* South America/Turks and Caicos Islands/*/* | ||
*/Antigua and Barbuda/*/* South America/Antigua and Barbuda/*/* | ||
*/Saint Kitts and Nevis/*/* South America/Saint Kitts and Nevis/*/* | ||
*/Espirito Santo/*/* South America/Espirito Santo/*/* | ||
*/Parana/*/* South America/Parana/*/* | ||
*/Rio de Janeiro/*/* South America/Rio de Janeiro/*/* | ||
*/Santa Catarina/*/* South America/Santa Catarina/*/* | ||
*/Amazonas/*/* South America/Amazonas/*/* | ||
*/Honduras/*/* South America/Honduras/*/* | ||
*/Monsterrat/*/* South America/Monsterrat/*/* | ||
*/St Lucia/*/* South America/St Lucia/*/* | ||
*/Brasil/*/* South America/Brasil/*/* | ||
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*/Australia/*/* Oceania/Australia/*/* | ||
*/New Zealand/*/* Oceania/New Zealand/*/* | ||
*/Polynesia/*/* Oceania/Polynesia/*/* | ||
*/Northern Mariana Islands/*/* Oceania/Northern Mariana Islands/*/* | ||
*/French Polynesia/*/* Oceania/French Polynesia/*/* | ||
*/Guam/*/* Oceania/Guam/*/* | ||
*/Wallis and Futuna/*/* Oceania/Wallis and Futuna/*/* | ||
*/Wallis and Futuna Islands/*/* Oceania/Wallis and Futuna Islands/*/* | ||
*/Palau/*/* Oceania/Palau/*/* | ||
*/American Samoa/*/* Oceania/American Samoa/*/* | ||
*/New Caledonia/*/* Oceania/New Caledonia/*/* | ||
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*/Kiribati/*/* Oceania/Kiribati/*/* | ||
*/Papua New Guinea/*/* Oceania/Papua New Guinea/*/* | ||
*/Vanuatu/*/* Oceania/Vanuatu/*/* | ||
*/Samoa/*/* Oceania/Samoa/*/* | ||
*/Tonga/*/* Oceania/Tonga/*/* | ||
*/Fiji/*/* Oceania/Fiji/*/* | ||
*/Kiribati/*/* Oceania/Kiribati/*/* | ||
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*/Senegal/*/* Africa/Senegal/*/* | ||
*/South Africa/*/* Africa/South Africa/*/* | ||
*/Democratic Republic of the Congo/*/* Africa/Democratic Republic of the Congo/*/* | ||
*/Madagascar/*/* Africa/Madagascar/*/* | ||
*/Egypt/*/* Africa/Egypt/*/* | ||
*/Cameroon/*/* Africa/Cameroon/*/* | ||
*/Reunion/*/* Africa/Reunion/*/* | ||
*/Nigeria/*/* Africa/Nigeria/*/* | ||
*/Côte D'Ivoire/*/* Africa/Côte D'Ivoire/*/* | ||
*/Equatorial Guinea/*/* Africa/Equatorial Guinea/*/* | ||
*/Tunisia/*/* Africa/Tunisia/*/* | ||
*/Burkina Faso/*/* Africa/Burkina Faso/*/* | ||
*/Morocco/*/* Africa/Morocco/*/* | ||
*/Mayotte/*/* Africa/Mayotte/*/* | ||
*/Mosambik/*/* Africa/Mosambik/*/* | ||
*/Gaborone/*/* Africa/Gaborone/*/* | ||
*/Cotedivoire/*/* Africa/Cotedivoire/*/* | ||
*/Ivory Coast/*/* Africa/Ivory Coast/*/* | ||
*/Côte d'Ivoire/*/* Africa/Côte d'Ivoire/*/* | ||
*/Côte D’Ivoire/*/* Africa/Côte D’Ivoire/*/* | ||
*/Cote Divoire/*/* Africa/Cote Divoire/*/* | ||
*/Togo/*/* Africa/Togo/*/* | ||
*/Mozambique/*/* Africa/Mozambique/*/* | ||
*/Réunion/*/* Africa/Réunion/*/* | ||
*/Namibia/*/* Africa/Namibia/*/* | ||
*/Ghana/*/* Africa/Ghana/*/* | ||
*/La Reunion/*/* Africa/La Reunion/*/* | ||
*/Lesotho/*/* Africa/Lesotho/*/* | ||
*/Cote D'Ivoire/*/* Africa/Cote D'Ivoire/*/* | ||
*/Malawi/*/* Africa/Malawi/*/* | ||
*/Comoros/*/* Africa/Comoros/*/* | ||
*/Angola/*/* Africa/Angola/*/* | ||
*/Uganda/*/* Africa/Uganda/*/* | ||
*/Zambia/*/* Africa/Zambia/*/* | ||
*/Botswana/*/* Africa/Botswana/*/* | ||
*/Congo/*/* Africa/Congo/*/* | ||
*/Guyane/*/* Africa/Guyane/*/* | ||
*/Mauritius/*/* Africa/Mauritius/*/* | ||
*/Somalia/*/* Africa/Somalia/*/* | ||
*/Burkinafaso/*/* Africa/Burkinafaso/*/* | ||
*/Niogeria/*/* Africa/Niogeria/*/* | ||
*/Kenya/*/* Africa/Kenya/*/* | ||
*/Canary Islands/*/* Africa/Canary Islands/*/* | ||
*/Sierra Leone/*/* Africa/Sierra Leone/*/* | ||
*/Djibouti/*/* Africa/Djibouti/*/* | ||
*/Democratic Republic of Congo/*/* Africa/Democratic Republic of Congo/*/* | ||
*/Cabo Verde/*/* Africa/Cabo Verde/*/* | ||
*/Guinea/*/* Africa/Guinea/*/* | ||
*/Algeria/*/* Africa/Algeria/*/* | ||
*/Liberia/*/* Africa/Liberia/*/* | ||
*/Zimbabwe/*/* Africa/Zimbabwe/*/* | ||
*/Gabon/*/* Africa/Gabon/*/* | ||
*/Eswatini/*/* Africa/Eswatini/*/* | ||
*/Rwanda/*/* Africa/Rwanda/*/* | ||
*/Ethiopia/*/* Africa/Ethiopia/*/* | ||
*/Benin/*/* Africa/Benin/*/* | ||
*/Sudan/*/* Africa/Sudan/*/* | ||
*/Republic of the Congo/*/* Africa/Republic of the Congo/*/* | ||
*/Seychelles/*/* Africa/Seychelles/*/* | ||
*/Niger/*/* Africa/Niger/*/* | ||
*/Cote d'Ivoire/*/* Africa/Cote d'Ivoire/*/* | ||
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*/Tanzania/*/* Africa/Tanzania/*/* | ||
*/Cape Verde/*/* Africa/Cape Verde/*/* | ||
*/Mali/*/* Africa/Mali/*/* | ||
*/Gambia/*/* Africa/Gambia/*/* | ||
*/Central African Republic/*/* Africa/Central African Republic/*/* |
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