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Commits on Oct 25, 2024

• Merge pull request #236: Remove CVXOPT build

  victorlin

  authoredOct 25, 2024
  abb3f91

Commits on Oct 23, 2024

• Merge pull request #235 from nextstrain/add-xlrd

  huddlej

  authoredOct 23, 2024
  301ec7e

• Add xlrd

  huddlej

  committedOct 23, 2024
  9f16808

• Remove CVXOPT build

  victorlin

  committedOct 23, 2024
  84d953d

Commits on Sep 5, 2024

• Merge branch 'trs/sqlite-cli'

  tsibley

  committedSep 5, 2024
  0acdc79

• Merge branch 'trs/debian-bookworm'

  tsibley

  committedSep 5, 2024
  ce11171

• Add the SQLite CLI for augur merge

  tsibley

  committedSep 5, 2024
  a3f0eaf

• Upgrade base image from Debian Bullseye (oldstable) to Bookworm (stable)

  tsibley

  committedSep 5, 2024
  82c12ba

Commits on Aug 20, 2024

• Merge pull request #230 from nextstrain/bump-pathogen-embed

  huddlej

  authoredAug 20, 2024
  f27da40

Commits on Aug 19, 2024

• Bump pathogen-embed to 3.0.0

  huddlej

  committedAug 19, 2024
  985e563

Commits on Aug 2, 2024

• Merge pull request #225 from nextstrain/update-lassa-ci

  joverlee521

  authoredAug 2, 2024
  6b87f2a

Commits on Jul 30, 2024

• Merge pull request #229: Bump pathogen-embed to 2.3.0

  victorlin

  authoredJul 30, 2024
  d8817e4

• Bump pathogen-embed to 2.3.0

  huddlej

  committedJul 30, 2024
  6c277d9

• Merge branch 'trs/iqtree-with-cmaple'

  tsibley

  committedJul 30, 2024
  addb745

Commits on Jul 29, 2024

• Upgrade IQ-TREE to 2.3.5 with CMAPLE support

  tsibley

  committedJul 29, 2024
  eb65217

Commits on Jul 25, 2024

• Merge pull request #224 from nextstrain/james/update-avian-flu-ci

  jameshadfield

  authoredJul 25, 2024
  b6911de

• Update avian-flu CI

  jameshadfield

  committedJul 25, 2024
  80b7af1

Commits on Jul 22, 2024

• Update lassa CI

  joverlee521

  committedJul 22, 2024
  8e598b2

• Merge pull request #223 from nextstrain/update-ci

  joverlee521

  authoredJul 22, 2024
  50de665

• CI: Add new pathogen repos

  joverlee521

  committedJul 22, 2024
  fceb0c4

• CI: Update test-pathogen-repo-ci

  joverlee521

  committedJul 22, 2024
  3cfbbba

Commits on Jun 24, 2024

• Fix broken link to CI workflow

  huddlej

  authoredJun 24, 2024
  2f55c83

• Merge pull request #221 from nextstrain/add-pathogen-embed

  huddlej

  authoredJun 24, 2024
  009b7af

Commits on Jun 20, 2024

• Copy installed Python scripts to final image

  huddlej

  committedJun 20, 2024
  3adc53c

• Add pathogen-embed to the base image

  huddlej

  committedJun 20, 2024
  931e134

Commits on Jun 17, 2024

• Merge branch 'trs/upload-snakemake-metadata'

  tsibley

  committedJun 17, 2024
  3f15ce3

• entrypoint-aws-batch: Upload .snakemake/metadata/ too

  tsibley

  committedJun 17, 2024
  442a5b7

• Merge pull request #219 from nextstrain/support-snakemake-reports

  joverlee521

  authoredJun 17, 2024
  ccac078

• Support Snakemake --report

  joverlee521

  committedJun 17, 2024
  a8132ef

Commits on Jun 12, 2024

• Merge branch 'trs/aws-cli-in-venv'

  tsibley

  committedJun 12, 2024
  286136b

• Merge pull request #217 from nextstrain/pin-pathogen-repo-ci

  joverlee521

  authoredJun 12, 2024
  ec0438a

• ci.yaml: Pin pathogen-repo-ci to v0

  joverlee521

  committedJun 12, 2024
  bdc0790

Commits on Jun 11, 2024

• Isolate AWS CLI (v1) into its own Python venv

  tsibley

  committedJun 11, 2024
  d041d6c

Commits on Apr 29, 2024

• Merge pull request #211: Reference new CI target

  victorlin

  authoredApr 29, 2024
  822a459

Commits on Apr 25, 2024

• Reference new CI target

  victorlin

  committedApr 25, 2024
  65054f4

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