Merge pull request #219 from nextstrain/support-snakemake-reports

Support Snakemake --report
nextstrain · Jun 17, 2024 · ccac078 · ccac078
2 parents 286136b + a8132ef
commit ccac078
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/Dockerfile b/Dockerfile
@@ -260,7 +260,7 @@ RUN python3 -m venv /usr/local/libexec/awscli \
 # Install Snakemake and related optional dependencies.
 # Pinned to 7.32.3 for stability (2023-09-09)
 # Pulp>=2.8.0 breaks snakemake <=8.1.1, see https://github.com/snakemake/snakemake/issues/2607
-RUN pip3 install snakemake==7.32.3 "pulp<2.8"
+RUN pip3 install snakemake[reports]==7.32.3 "pulp<2.8"
 # Google Cloud Storage package is required for Snakemake to fetch remote files
 # from Google Storage URIs.
 RUN pip3 install google-cloud-storage==2.7.0