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Run h5n1-cattle-outbreak builds on AWS Batch
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The build has recently expanded in scope with the addition of
segment-level builds resulting in runtime increase from ~10min to
~80min. Parallelisation should speed this up a lot.
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jameshadfield committed Jul 25, 2024
1 parent ab3ef2e commit e6b9158
Showing 1 changed file with 5 additions and 1 deletion.
6 changes: 5 additions & 1 deletion .github/workflows/phylogenetic-ncbi.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -78,7 +78,7 @@ jobs:
uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master
secrets: inherit
with:
runtime: docker
runtime: aws-batch
run: |
declare -a config;
Expand All @@ -89,6 +89,10 @@ jobs:
fi;
nextstrain build \
--detach \
--no-download \
--cpus 16 \
--memory 28800mib \
. \
deploy_all \
--configfile config/h5n1-cattle-outbreak.yaml \
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