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[ancestral] reference seq may be reference or inferred tree root
bug
Something isn't working
priority: low
To be resolved after high and moderate priority issues
#1362
opened Dec 18, 2023 by
jameshadfield
Numpy deprecation warnings for pandas imports
priority: low
To be resolved after high and moderate priority issues
#1316
opened Sep 15, 2023 by
corneliusroemer
Frequency estimation fails with missing data.
bug
Something isn't working
priority: low
To be resolved after high and moderate priority issues
#582
opened Jun 27, 2020 by
rneher
How to have more control over the contents of the maintainers section?
enhancement
New feature or request
priority: low
To be resolved after high and moderate priority issues
#515
opened Apr 3, 2020 by
terrycojones
[BUG] augur mask only supports VCFs with a single "chromosome" entry
bug
Something isn't working
moderate problem
Requires an average amount of work
priority: low
To be resolved after high and moderate priority issues
#507
opened Mar 31, 2020 by
huddlej
Feature request: Command to convert .json to .nwk
enhancement
New feature or request
priority: low
To be resolved after high and moderate priority issues
#438
opened Feb 3, 2020 by
mvolz
Make Sequence Traits work with Fasta Input
enhancement
New feature or request
moderate problem
Requires an average amount of work
priority: low
To be resolved after high and moderate priority issues
#415
opened Nov 21, 2019 by
emmahodcroft
augur export prefers num_date over numdate exported by augur refine
bug
Something isn't working
easy problem
Requires less work than most issues
priority: low
To be resolved after high and moderate priority issues
#215
opened Sep 5, 2018 by
huddlej
Frequencies JSON spec
breaking
Makes a backwards incompatible change and should wait for major release
enhancement
New feature or request
moderate problem
Requires an average amount of work
priority: low
To be resolved after high and moderate priority issues
#84
opened Feb 22, 2018 by
trvrb
Store titer records in TiterRecord class and export in structured JSON format
easy problem
Requires less work than most issues
enhancement
New feature or request
priority: low
To be resolved after high and moderate priority issues
#35
opened Jul 20, 2017 by
huddlej
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