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export v2: Add option to choose sample name from metadata #1264
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See nextstrain/auspice#1668 for an alternative solution |
@jameshadfield Ah nice! I totally missed that PR! Then we would need to add I also think |
Great suggestions -- I think that Auspice PR needs more testing & feedback before we use it, but I think it's ultimately a better direction than swapping back in the strain name (as monkeypox + rsv do) because of how duplicate node names are handled in Auspice. |
Closing since the alternative solution in Auspice has been released. |
Context
Since #1240, we support using arbitrary columns as the metadata ID column.
This column is then used as the sample
name
in the final output Auspice JSON.Description
It would be nice to be able to choose a different column from the metadata to use as the sample name.
The column used as the metadata ID may not be descriptive enough to use as the sample name for display in Auspice.
Examples
We already do this in basically identical scripts for monkeypox and rsv.
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