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Issues list

curate apply-geolocation-rules: Allow rule overrides enhancement New feature or request
#1648 opened Oct 3, 2024 by joverlee521
Also accept "region" as synonym of "source" for gb files? enhancement New feature or request
#1643 opened Sep 25, 2024 by corneliusroemer
1
augur merge is slow to read in metadata enhancement New feature or request
#1628 opened Sep 10, 2024 by tsibley
2 tasks
merge: Import metadata files concurrently? enhancement New feature or request
#1617 opened Sep 3, 2024 by tsibley
filter: Make under-sampling more apparent enhancement New feature or request
#1590 opened Aug 20, 2024 by victorlin
@victorlin
augur curate format-host enhancement New feature or request
#1586 opened Aug 20, 2024 by joverlee521
1
merge: Support sequences enhancement New feature or request
#1579 opened Aug 15, 2024 by tsibley
2
@victorlin
10
parse-genbank-location should warn about region/locality mix ups enhancement New feature or request
#1578 opened Aug 14, 2024 by joverlee521
2
Speed up augur filter enhancement New feature or request
#1575 opened Aug 9, 2024 by victorlin
Speed up augur filter by replacing Pandas enhancement New feature or request
#1574 opened Aug 9, 2024 by victorlin
2 tasks
1
Speed up augur filter without replacing Pandas enhancement New feature or request
#1573 opened Aug 9, 2024 by victorlin
4 of 5 tasks
augur curate: improve metadata header parsing enhancement New feature or request
#1553 opened Jul 18, 2024 by joverlee521
1
Officially support python 3.12: test for it and add trove classifier blocked Dependent on external development enhancement New feature or request
#1536 opened Jul 11, 2024 by corneliusroemer
1
augur curate rename: Add option to drop fields/columns enhancement New feature or request
#1526 opened Jul 8, 2024 by joverlee521
4
[export] format confidence values to save bytes enhancement New feature or request
#1505 opened Jun 30, 2024 by jameshadfield
Support numpy major version 2 enhancement New feature or request
#1504 opened Jun 29, 2024 by corneliusroemer
1
Extend augur curate format-dates to output date ranges enhancement New feature or request
#1494 opened Jun 27, 2024 by joverlee521
refine: Support rooting with time data without producing a time tree enhancement New feature or request
#1479 opened Jun 5, 2024 by huddlej
Support pandas version 2 enhancement New feature or request
#1473 opened May 22, 2024 by victorlin
6
export: Add option to extend the default lat/longs enhancement New feature or request
#1465 opened May 16, 2024 by victorlin
3
Allow custom date column name to be specified in refine - similar to metadata-id-column enhancement New feature or request
#1443 opened Apr 2, 2024 by corneliusroemer
1
Add schema for node-data JSONs enhancement New feature or request
#1441 opened Mar 19, 2024 by joverlee521
1
Improve validation output to identify problematic nodes / properties enhancement New feature or request
#1426 opened Mar 3, 2024 by jameshadfield
frequencies: Validate arguments enhancement New feature or request
#1414 opened Feb 14, 2024 by victorlin
Add jq to dev dependency enhancement New feature or request
#1399 opened Jan 26, 2024 by joverlee521
2
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