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curate apply-geolocation-rules: Allow rule overrides
enhancement
New feature or request
#1648
opened Oct 3, 2024 by
joverlee521
Also accept "region" as synonym of "source" for gb files?
enhancement
New feature or request
#1643
opened Sep 25, 2024 by
corneliusroemer
augur merge
is slow to read in metadata
enhancement
#1628
opened Sep 10, 2024 by
tsibley
2 tasks
merge: Import metadata files concurrently?
enhancement
New feature or request
#1617
opened Sep 3, 2024 by
tsibley
filter: Make under-sampling more apparent
enhancement
New feature or request
#1590
opened Aug 20, 2024 by
victorlin
augur curate format-host
enhancement
New feature or request
#1586
opened Aug 20, 2024 by
joverlee521
parse-genbank-location
should warn about region/locality mix ups
enhancement
#1578
opened Aug 14, 2024 by
joverlee521
Speed up augur filter by replacing Pandas
enhancement
New feature or request
#1574
opened Aug 9, 2024 by
victorlin
2 tasks
Speed up augur filter without replacing Pandas
enhancement
New feature or request
#1573
opened Aug 9, 2024 by
victorlin
4 of 5 tasks
augur curate: improve metadata header parsing
enhancement
New feature or request
#1553
opened Jul 18, 2024 by
joverlee521
Officially support python 3.12: test for it and add trove classifier
blocked
Dependent on external development
enhancement
New feature or request
#1536
opened Jul 11, 2024 by
corneliusroemer
augur curate rename: Add option to drop fields/columns
enhancement
New feature or request
#1526
opened Jul 8, 2024 by
joverlee521
[export] format confidence values to save bytes
enhancement
New feature or request
#1505
opened Jun 30, 2024 by
jameshadfield
Support numpy major version 2
enhancement
New feature or request
#1504
opened Jun 29, 2024 by
corneliusroemer
Extend New feature or request
augur curate format-dates
to output date ranges
enhancement
#1494
opened Jun 27, 2024 by
joverlee521
refine: Support rooting with time data without producing a time tree
enhancement
New feature or request
#1479
opened Jun 5, 2024 by
huddlej
export: Add option to extend the default lat/longs
enhancement
New feature or request
#1465
opened May 16, 2024 by
victorlin
Allow custom date column name to be specified in New feature or request
refine
- similar to metadata-id-column
enhancement
#1443
opened Apr 2, 2024 by
corneliusroemer
Add schema for node-data JSONs
enhancement
New feature or request
#1441
opened Mar 19, 2024 by
joverlee521
Improve validation output to identify problematic nodes / properties
enhancement
New feature or request
#1426
opened Mar 3, 2024 by
jameshadfield
frequencies: Validate arguments
enhancement
New feature or request
#1414
opened Feb 14, 2024 by
victorlin
Add New feature or request
jq
to dev dependency
enhancement
#1399
opened Jan 26, 2024 by
joverlee521
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