Sync outdated developer API docs, add check in CI #2536

Job	Run time
check-docs	37s
pathogen-repo-ci (avian-flu)	43s
pyright	14s
mypy	48s
pathogen-repo-ci (ebola)	53s
pathogen-repo-ci (lassa)	44s
test (python=3.8 biopython=1.80)	9m 27s
pathogen-repo-ci (mumps)	54s
test (python=3.8 biopython=latest)	9m 10s
pathogen-repo-ci (ncov)	1m 3s
test (python=3.9 biopython=1.80)	9m 56s
pathogen-repo-ci (rsv)	2m 17s
test (python=3.9 biopython=latest)	10m 7s
pathogen-repo-ci (seasonal-flu)	1m 2s
test (python=3.10 biopython=1.80)	9m 33s
pathogen-repo-ci (tb)	1m 18s
test (python=3.10 biopython=latest)	9m 43s
test (python=3.11 biopython=1.80)	9m 36s
test (python=3.11 biopython=latest)	9m 51s
build-docs / build-conda	0s
build-docs / build-pip	59s
codecov	15s
	1h 29m 10s

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