pathogen-repo-ci: Show pathogen workflow conclusions in the GitHub wo…

…rkflow summary A good suggestion by @joverlee521 in review.¹ ¹ <#96 (comment)>
nextstrain · Jun 14, 2024 · efb5519 · efb5519
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diff --git a/.github/workflows/pathogen-repo-ci.yaml b/.github/workflows/pathogen-repo-ci.yaml
@@ -324,11 +324,14 @@ jobs:
           phylogenetic: ${{ steps.phylogenetic.conclusion }}
           nextclade: ${{ steps.nextclade.conclusion }}
         run: |
-          # Show step conclusions.
+          # Show step conclusions in job logs…
           echo "ingest        $ingest"
           echo "phylogenetic  $phylogenetic"
           echo "nextclade     $nextclade"
 
+          # …and also in the workflow summary.
+          "$NEXTSTRAIN_GITHUB_DIR"/bin/interpolate-env < "$NEXTSTRAIN_GITHUB_DIR"/text-templates/pathogen-repo-ci.md > "$GITHUB_STEP_SUMMARY"
+
           # Assert status; if we see at least one attempt, regardless of
           # success/failure, we're good.
           [[ $ingest != skipped || $phylogenetic != skipped || $nextclade != skipped ]]
diff --git a/.github/workflows/pathogen-repo-ci.yaml.in b/.github/workflows/pathogen-repo-ci.yaml.in
@@ -305,11 +305,14 @@ jobs:
           phylogenetic: ${{ steps.phylogenetic.conclusion }}
           nextclade: ${{ steps.nextclade.conclusion }}
         run: |
-          # Show step conclusions.
+          # Show step conclusions in job logs…
           echo "ingest        $ingest"
           echo "phylogenetic  $phylogenetic"
           echo "nextclade     $nextclade"
 
+          # …and also in the workflow summary.
+          "$NEXTSTRAIN_GITHUB_DIR"/bin/interpolate-env < "$NEXTSTRAIN_GITHUB_DIR"/text-templates/pathogen-repo-ci.md > "$GITHUB_STEP_SUMMARY"
+
           # Assert status; if we see at least one attempt, regardless of
           # success/failure, we're good.
           [[ $ingest != skipped || $phylogenetic != skipped || $nextclade != skipped ]]
diff --git a/README.md b/README.md
@@ -115,6 +115,7 @@ Executable scripts that are used in our workflows.
 Text templates for messages and summaries in our workflows.
 
 - [attach-aws-batch](text-templates/attach-aws-batch.md)
+- [pathogen-repo-ci](text-templates/pathogen-repo-ci.md)
 
 
 ## Development tools for this repo itself

diff --git a/text-templates/pathogen-repo-ci.md b/text-templates/pathogen-repo-ci.md
@@ -0,0 +1,5 @@
+| workflow      | conclusion      |
+| ------------- | --------------- |
+| ingest        | ${ingest}       |
+| phylogenetic  | ${phylogenetic} |
+| nextclade     | ${nextclade}    |