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CDS and mRNA seq extraction doesn't respect codon_start #611

@hyphaltip

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@hyphaltip

This line retrieves / respects the codon_start when generating the protein translation. however the lines which establish the coding seq in first place don't - so we should probably move this upstream in some way to slice off codon_start nucleotides from the coding sequence so it can be translateable.

protSeq = translate(cdsSeq, v['strand'], v['codon_start'][i]-1)

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