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format file-path-pattern #118
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mirpedrol
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Oct 18, 2023
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mirpedrol
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Only a couple of small comments, otherwise looks good :)
| } | ||
| ArrayList files = Nextflow.file(subject) as ArrayList | ||
| ArrayList errors = [] | ||
| println("${subject}: ${files.size()}") |
| if(format) { | ||
| if(format == "file-path-pattern") { | ||
| def ArrayList inputFiles = Nextflow.file(input) as ArrayList | ||
| return inputFiles |
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These files will be added to the channel in an array if I understood well, we should document this
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Fixes #100
Adds a new format type called
file-path-patternwhich will validate every file found using the globbing pattern in the parameter. Support for globs has also been added to the samplesheet converter, which will now create a list with the files fetched using that glob pattern