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Description
Steps to reproduce
- Install nginx and rest of ecosystem as per the documentation
 - Upload many small files (in my case, about 1KB to 5MB, most files around 50KB size)
 
Expected behaviour
Files should upload at an expected speed.
Actual behaviour
It takes about 20 minutes to upload about 20MB of small files
Server configuration
Operating system: FreeBSD 11.1
Web server: 1.12.1
Database: 10.2.6
PHP version: 7.1.9
Nextcloud version: (see Nextcloud admin page) 12.0.3
Updated from an older Nextcloud/ownCloud or fresh install: From 12.0.1
Where did you install Nextcloud from: Source packages on nextcloud.com
Signing status:
Signing status
Login as admin user into your Nextcloud and access 
http://example.com/index.php/settings/integrity/failed 
No errors have been found.
List of activated apps:
App list
If you have access to your command line run e.g.:
sudo -u www-data php occ app:list
from within your Nextcloud installation folder
  - activity: 2.5.2
  - admin_audit: 1.2.0
  - admin_notifications: 1.0.0
  - announcementcenter: 3.1.0
  - apporder: 0.4.0
  - bruteforcesettings: 1.0.2
  - calendar: 1.5.5
  - checksum: 0.3.5
  - comments: 1.2.0
  - contacts: 1.5.3
  - dav: 1.3.0
  - drawio: 0.8.8
  - federatedfilesharing: 1.2.0
  - federation: 1.2.0
  - files: 1.7.2
  - files_accesscontrol: 1.2.5
  - files_automatedtagging: 1.2.2
  - files_downloadactivity: 1.1.1
  - files_pdfviewer: 1.1.1
  - files_sharing: 1.4.0
  - files_texteditor: 2.4.1
  - files_trashbin: 1.2.0
  - files_versions: 1.5.0
  - files_videoplayer: 1.1.0
  - firstrunwizard: 2.1
  - gallery: 17.0.0
  - groupfolders: 1.1.0
  - impersonate: 1.0.1
  - keeweb: 0.4.0
  - logreader: 2.0.0
  - lookup_server_connector: 1.0.0
  - mail: 0.7.3
  - nextcloud_announcements: 1.1
  - notifications: 2.0.0
  - oauth2: 1.0.5
  - ocdownloader: 1.5.4
  - password_policy: 1.2.2
  - provisioning_api: 1.2.0
  - quota_warning: 1.1.0
  - serverinfo: 1.2.0
  - sharebymail: 1.2.0
  - socialsharing_email: 1.0.1
  - spreed: 2.0.1
  - survey_client: 1.0.0
  - systemtags: 1.2.0
  - tasks: 0.9.5
  - theming: 1.3.0
  - twofactor_backupcodes: 1.1.1
  - twofactor_totp: 1.3.1
  - twofactor_u2f: 1.3.3
  - updatenotification: 1.2.0
  - workflowengine: 1.2.0
Disabled:
  - encryption
  - files_external
  - onlyoffice
  - passman
  - user_external
  - user_ldap
Nextcloud configuration:
Config report
If you have access to your command line run e.g.:
sudo -u www-data php occ config:list system
from within your Nextcloud installation folder
{
    "system": {
        "instanceid": "instanceid",
        "passwordsalt": "***REMOVED SENSITIVE VALUE***",
        "secret": "***REMOVED SENSITIVE VALUE***",
        "trusted_domains": [
            "172.16.0.10",
            "domain1",
            "domain2"
        ],
        "datadirectory": "\/mnt\/nc_data",
        "overwrite.cli.url": "http:\/\/172.16.0.10",
        "dbtype": "mysql",
        "version": "12.0.3.3",
        "dbname": "nextclouddb",
        "dbhost": "localhost",
        "dbport": "",
        "dbtableprefix": "oc_",
        "dbuser": "***REMOVED SENSITIVE VALUE***",
        "dbpassword": "***REMOVED SENSITIVE VALUE***",
        "logtimezone": "UTC",
        "installed": true,
        "loglevel": 1,
        "memcache.local": "\\OC\\Memcache\\APCu",
        "redis": {
            "host": "\/tmp\/redis.sock",
            "port": 0
        },
        "memcache.locking": "\\OC\\Memcache\\Redis",
        "maintenance": false,
        "mail_smtpmode": "smtp",
        "mail_smtpsecure": "ssl",
        "mail_smtpauthtype": "LOGIN",
        "mail_smtpauth": 1,
        "mail_from_address": "myemail",
        "mail_domain": "gmail.com",
        "mail_smtphost": "smtp.gmail.com",
        "mail_smtpport": "465",
        "mail_smtpname": "***REMOVED SENSITIVE VALUE***",
        "mail_smtppassword": "***REMOVED SENSITIVE VALUE***",
        "theme": "",
        "updater.release.channel": "stable"
    }
}
Are you using external storage, if yes which one: none
Are you using encryption: no
Are you using an external user-backend, if yes which one: no
Client configuration
Browser: Firefox 57, 58, Chromium 60
Operating system: Windows 10, Fedora 26
Logs
Web server error log
Web server error log
Insert your webserver log here
2017/10/02 21:14:09 [error] 47507#101971: accept4() failed (53: Software caused connection abort)
2017/10/02 21:14:11 [error] 47507#101971: accept4() failed (53: Software caused connection abort)
2017/10/02 21:14:13 [error] 47507#101971: accept4() failed (53: Software caused connection abort)
2017/10/02 21:14:15 [error] 47507#101971: accept4() failed (53: Software caused connection abort)
2017/10/02 21:14:17 [error] 47507#101971: accept4() failed (53: Software caused connection abort)
2017/10/02 21:14:19 [error] 47507#101971: accept4() failed (53: Software caused connection abort)
2017/10/02 21:14:21 [error] 47507#101971: accept4() failed (53: Software caused connection abort)
2017/10/02 21:14:23 [error] 47507#101971: accept4() failed (53: Software caused connection abort)
2017/10/02 21:14:25 [error] 47507#101971: accept4() failed (53: Software caused connection abort)
2017/10/02 21:14:27 [error] 47507#101971: accept4() failed (53: Software caused connection abort)
Here is my nginx config file, this problem doesn't appear to happen on Apache
user www;
worker_processes	1;
error_log	/var/log/nginx/error.log;
events {
	worker_connections 1024;
}
http {
	include mime.types;
	default_type application/octet-stream;
	sendfile on;
	keepalive_timeout 70;
	upstream php-handler {
		#server 127.0.0.1:9000;
		server unix:/var/run/php-fpm.sock;
	}
	server_tokens	off;
	access_log	/var/log/nginx/access.log;
server {
    listen 80;
    server_name domainname;
    # enforce https
    return 301 https://$server_name$request_uri;
}
server {
    listen 443 ssl http2;
    server_name domainname
    ssl on;
    ssl_certificate /usr/local/etc/letsencrypt/live/domainname/fullchain.pem;
    ssl_certificate_key /usr/local/etc/letsencrypt/live/domainname/privkey.pem;
        ssl_session_timeout 1d;
        ssl_session_cache shared:SSL:50m;
        ssl_session_tickets off;
        ssl_protocols TLSv1.1 TLSv1.2;
        ssl_prefer_server_ciphers on;
        ssl_dhparam /usr/local/etc/ssl/dhparam.pem;
	ssl_ciphers 'ECDHE-RSA-AES128-GCM-SHA256:ECDHE-ECDSA-AES128-GCM-SHA256:ECDHE-RSA-AES256-GCM-SHA384:ECDHE-ECDSA-AES256-GCM-SHA384:DHE-RSA-AES128-GCM-SHA256:DHE-DSS-AES128-GCM-SHA256:kEDH+AESGCM:ECDHE-RSA-AES128-SHA256:ECDHE-ECDSA-AES128-SHA256:ECDHE-RSA-AES128-SHA:ECDHE-ECDSA-AES128-SHA:ECDHE-RSA-AES256-SHA384:ECDHE-ECDSA-AES256-SHA384:ECDHE-RSA-AES256-SHA:ECDHE-ECDSA-AES256-SHA:DHE-RSA-AES128-SHA256:DHE-RSA-AES128-SHA:DHE-DSS-AES128-SHA256:DHE-RSA-AES256-SHA256:DHE-DSS-AES256-SHA:DHE-RSA-AES256-SHA:AES128-GCM-SHA256:AES256-GCM-SHA384:AES128-SHA256:AES256-SHA256:AES128-SHA:AES256-SHA:AES:CAMELLIA:DES-CBC3-SHA:!aNULL:!eNULL:!EXPORT:!DES:!RC4:!MD5:!PSK:!aECDH:!EDH-DSS-DES-CBC3-SHA:!EDH-RSA-DES-CBC3-SHA:!KRB5-DES-CBC3-SHA';
                # OCSP Stapling ---
                # fetch OCSP records from URL in ssl_certificate and cache them
                ssl_stapling on;
                ssl_stapling_verify on;
    # Add headers to serve security related headers
    # Before enabling Strict-Transport-Security headers please read into this
    # topic first.
    # add_header Strict-Transport-Security "max-age=15768000;
    # includeSubDomains; preload;";
    #
    # WARNING: Only add the preload option once you read about
    # the consequences in https://hstspreload.org/. This option
    # will add the domain to a hardcoded list that is shipped
    # in all major browsers and getting removed from this list
    # could take several months.
    add_header X-Content-Type-Options nosniff;
    add_header X-XSS-Protection "1; mode=block";
    add_header X-Robots-Tag none;
    add_header X-Download-Options noopen;
    add_header X-Permitted-Cross-Domain-Policies none;
    add_header Strict-Transport_security "max-age=15552000; includeSubDomains; preload";
    # Path to the root of your installation
    root /usr/local/www/nginx/nextcloud;
    location = /robots.txt {
        allow all;
        log_not_found off;
        access_log off;
    }
    # The following 2 rules are only needed for the user_webfinger app.
    # Uncomment it if you're planning to use this app.
    #rewrite ^/.well-known/host-meta /public.php?service=host-meta last;
    #rewrite ^/.well-known/host-meta.json /public.php?service=host-meta-json
    # last;
    location = /.well-known/carddav {
      return 301 $scheme://$host/remote.php/dav;
    }
    location = /.well-known/caldav {
      return 301 $scheme://$host/remote.php/dav;
    }
    # set max upload size
    client_max_body_size 2048M;
    #fastcgi_buffers 64 4K;
    fastcgi_buffers 128 1M;
    # Enable gzip but do not remove ETag headers
    gzip on;
    gzip_vary on;
    gzip_comp_level 4;
    gzip_min_length 256;
    gzip_proxied expired no-cache no-store private no_last_modified no_etag auth;
    gzip_types application/atom+xml application/javascript application/json application/ld+json application/manifest+json application/rss+xml 
application/vnd.geo+json application/vnd.ms-fontobject application/x-font-ttf application/x-web-app-manifest+json application/xhtml+xml 
application/xml font/opentype image/bmp image/svg+xml image/x-icon text/cache-manifest text/css text/plain text/vcard text/vnd.rim.location.xloc 
text/vtt text/x-component text/x-cross-domain-policy;
    # Uncomment if your server is build with the ngx_pagespeed module
    # This module is currently not supported.
    #pagespeed off;
    location / {
        rewrite ^ /index.php$uri;
    }
    location ~ ^/(?:build|tests|config|lib|3rdparty|templates|data)/ {
        deny all;
    }
    location ~ ^/(?:\.|autotest|occ|issue|indie|db_|console) {
        deny all;
    }
    location ~ ^/(?:index|remote|public|cron|core/ajax/update|status|ocs/v[12]|updater/.+|ocs-provider/.+)\.php(?:$|/) {
        fastcgi_split_path_info ^(.+\.php)(/.*)$;
        include fastcgi_params;
        fastcgi_param SCRIPT_FILENAME $document_root$fastcgi_script_name;
        fastcgi_param PATH_INFO $fastcgi_path_info;
        fastcgi_param HTTPS on;
        #Avoid sending the security headers twice
        fastcgi_param modHeadersAvailable true;
        fastcgi_param front_controller_active true;
        fastcgi_pass php-handler;
        fastcgi_intercept_errors on;
        fastcgi_request_buffering off;
    }
    location ~ ^/(?:updater|ocs-provider)(?:$|/) {
        try_files $uri/ =404;
        index index.php;
    }
    # Adding the cache control header for js and css files
    # Make sure it is BELOW the PHP block
    location ~ \.(?:css|js|woff|svg|gif)$ {
        try_files $uri /index.php$uri$is_args$args;
        add_header Cache-Control "public, max-age=15778463";
        # Add headers to serve security related headers (It is intended to
        # have those duplicated to the ones above)
        # Before enabling Strict-Transport-Security headers please read into
        # this topic first.
        # add_header Strict-Transport-Security "max-age=15768000;
        #  includeSubDomains; preload;";
        #
        # WARNING: Only add the preload option once you read about
        # the consequences in https://hstspreload.org/. This option
        # will add the domain to a hardcoded list that is shipped
        # in all major browsers and getting removed from this list
        # could take several months.
        add_header X-Content-Type-Options nosniff;
        add_header X-XSS-Protection "1; mode=block";
        add_header X-Robots-Tag none;
        add_header X-Download-Options noopen;
        add_header X-Permitted-Cross-Domain-Policies none;
	add_header Strict-Transport_security "max-age=15552000; includeSubDomains; preload";
        # Optional: Don't log access to assets
        access_log off;
    }
    location ~ \.(?:png|html|ttf|ico|jpg|jpeg)$ {
        try_files $uri /index.php$uri$is_args$args;
        # Optional: Don't log access to other assets
        access_log off;
    }
}
}
I also have OPCache being used. It is strange that the issue only occurs via the web interface, and not from the desktop clients