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Support clusters table in Diagnostics #765

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merged 20 commits into from
Mar 10, 2023
Merged

Support clusters table in Diagnostics #765

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862fdbb
Support clusters table in Diagnostics
JulioAPeraza Feb 1, 2023
2cf86c5
Merge branch 'neurostuff:main' into enh-diagnostics
JulioAPeraza Feb 1, 2023
17a4072
Fix ale workflow
JulioAPeraza Feb 1, 2023
19dce60
Update ale.py
JulioAPeraza Feb 1, 2023
3c5b57a
Merge branch 'neurostuff:main' into enh-diagnostics
JulioAPeraza Feb 6, 2023
7a808f5
Use reporting.get_clusters_table to get clusters table
JulioAPeraza Feb 7, 2023
1266dcf
Skip get_clusters_table if table exist in result object
JulioAPeraza Feb 7, 2023
d25d8ce
Change order of testing workflows
JulioAPeraza Feb 9, 2023
d4a4b32
Revert "Change order of testing workflows"
JulioAPeraza Feb 13, 2023
f278d21
Show clusters table in the example
JulioAPeraza Feb 17, 2023
4eca1db
Update test_diagnostics.py
JulioAPeraza Feb 17, 2023
adb1972
Update diagnostics.py
JulioAPeraza Feb 17, 2023
f4411ef
Add _get_clusters_table from nilearn
JulioAPeraza Mar 3, 2023
9ae4e4a
Update diagnostics.py
JulioAPeraza Mar 3, 2023
76d1c27
Merge branch 'neurostuff:main' into enh-diagnostics
JulioAPeraza Mar 3, 2023
c5e79f4
Update utils.py
JulioAPeraza Mar 3, 2023
69b85ac
Merge branch 'enh-diagnostics' of https://github.com/JulioAPeraza/NiM…
JulioAPeraza Mar 3, 2023
14c7006
Update setup.cfg
JulioAPeraza Mar 3, 2023
bd6eec0
Pin minimum version of nilearn
JulioAPeraza Mar 3, 2023
809792f
Update doc, add latest changes from nilearn
JulioAPeraza Mar 8, 2023
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11 changes: 9 additions & 2 deletions examples/02_meta-analyses/08_plot_cbma_subtraction_conjunction.py
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Original file line number Diff line number Diff line change
Expand Up @@ -104,7 +104,14 @@
target_image="z_desc-size_level-cluster_corr-FWE_method-montecarlo",
voxel_thresh=None,
)
knowledge_count_table, _ = counter.transform(knowledge_corrected_results)
knowledge_count_table, knowledge_clusters_table, _ = counter.transform(knowledge_corrected_results)

###############################################################################
# Clusters table.
knowledge_clusters_table.head(10)

###############################################################################
# Contribution table. Here ``PostiveTail`` refers to clusters with positive statistics.
knowledge_count_table.head(10)

###############################################################################
Expand All @@ -114,7 +121,7 @@
target_image="z_desc-size_level-cluster_corr-FWE_method-montecarlo",
voxel_thresh=None,
)
related_jackknife_table, _ = jackknife.transform(related_corrected_results)
related_jackknife_table, _, _ = jackknife.transform(related_corrected_results)
related_jackknife_table.head(10)

###############################################################################
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