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simplify nm_database create out_dir
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toni-neurosc committed Aug 1, 2024
1 parent e058b96 commit c0d9ff1
Showing 1 changed file with 5 additions and 8 deletions.
13 changes: 5 additions & 8 deletions py_neuromodulation/nm_database.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,5 @@
import sqlite3
from pathlib import Path
import os
import pandas as pd
from py_neuromodulation.nm_types import _PathLike
from py_neuromodulation.nm_IO import generate_unique_filename
Expand All @@ -23,6 +22,9 @@ def __init__(
out_dir: _PathLike,
csv_path: _PathLike | None = None,
):
# Make sure out_dir exists
Path(out_dir).mkdir(parents=True, exist_ok=True)

self.db_path = Path(out_dir, f"{name}.db")

self.table_name = f"{name}_data" # change to param?
Expand All @@ -31,20 +33,15 @@ def __init__(
if self.db_path.exists():
self.db_path = generate_unique_filename(self.db_path)
name = self.db_path.stem
# raise FileExistsError(f"Database file {self.db_path} already exists.")

if csv_path is None:
self.csv_path = Path(out_dir, f"{name}.csv")
else:
self.csv_path = Path(csv_path)

try:
self.conn = sqlite3.connect(self.db_path)
except sqlite3.OperationalError as e:
os.makedirs(out_dir, exist_ok=True)
finally:
self.conn = sqlite3.connect(self.db_path)
self.csv_path.parent.mkdir(parents=True, exist_ok=True)

self.conn = sqlite3.connect(self.db_path)
self.cursor = self.conn.cursor()

# Database config and optimization, prioritize data integrity
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