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nesi-apps-admin committed Nov 7, 2024
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158 changes: 23 additions & 135 deletions .module-list-generated.json
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Original file line number Diff line number Diff line change
Expand Up @@ -923,8 +923,7 @@
"homepage": "https://developer.amd.com/amd-cpu-libraries/blas-library/",
"support": "",
"versions": [
"4.0-GCC-11.3.0",
"4.0-GCC-11.3.0.bak_20230323130534_189751"
"4.0-GCC-11.3.0"
],
"admin_list": [],
"network_licences": [],
Expand Down Expand Up @@ -1564,7 +1563,6 @@
"versions": [
"20180226-gimpi-2018b",
"20190508-gimpi-2018b",
"20200620-gimpi-2020.bak_20210505170314_163592",
"20200620-gimpi-2020a",
"20220112-gimpi-2020a",
"20220324-gimpi-2020a"
Expand All @@ -1581,11 +1579,11 @@
}
],
"network_licences": [],
"default": "20200620-gimpi-2020.bak_20210505170314_163592",
"default": "20180226-gimpi-2018b",
"default_type": "latest",
"last_updated": 1648087186,
"modulefile_text": "",
"module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/Basilisk/20200620-gimpi-2020.bak_20210505170314_163592",
"module_path": "/opt/nesi/CS400_centos7_bdw/modules/tools/Basilisk/20180226-gimpi-2018b.lua",
"force_hide": "False",
"force_show": "False"
},
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"force_hide": "False",
"force_show": "False"
},
"BreakDancer": {
"description": "Genome-wide detection of structural variants from next generation paired-end sequencing reads.",
"domains": [
"bio"
],
"extensions": [],
"licence_type": "",
"homepage": "http://gmt.genome.wustl.edu/packages/breakdancer/index.html",
"support": "",
"versions": [
"1.4.5-gimkl-2017a"
],
"admin_list": [
{
"1.4.5-gimkl-2017a": "Warning: BreakDancer is obsolete and will soon be removed."
}
],
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"default": "1.4.5-gimkl-2017a",
"default_type": "latest",
"last_updated": 1537315510,
"modulefile_text": "",
"module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/BreakDancer/1.4.5-gimkl-2017a.lua.bak_20180919120510",
"force_hide": "False",
"force_show": "False"
},
"BreakSeq2": {
"description": "Nucleotide-resolution analysis of structural variants",
"domains": [
Expand Down Expand Up @@ -6426,7 +6398,6 @@
"versions": [
"3.3.10-GCC-12.3.0",
"3.3.10-gompi-2022a",
"3.3.10-gompi-2022a.bak_20220607143803_109089",
"3.3.10-intel-compilers-2023.2.1",
"3.3.5-gimkl-2017a",
"3.3.8-gimpi-2018b",
Expand Down Expand Up @@ -7467,7 +7438,7 @@
"force_show": "False"
},
"GDAL": {
"description": "GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style\n Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model\n to the calling application for all supported formats. It also comes with a variety of useful command-line utilities for\n data translation and processing.\n NOTE: The GDAL IO cache by default uses 5% of total memory. This seems not necessary. This module sets GDAL_CACHEMAX=256 (256MB), \n which should have no performance impact. Feel free to change if necessary, using 'export GDAL_CACHEMAX=xxx' (in your job script) \n after loading the GDAL module. ",
"description": "GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style\n Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model\n to the calling application for all supported formats. It also comes with a variety of useful command-line utilities for\n data translation and processing. \n NOTE: The GDAL IO cache by default uses 5% of total memory. This seems not necessary. This module sets GDAL_CACHEMAX=256 (256MB), which should have no performance impact. Feel free to change if necessary, using 'export GDAL_CACHEMAX=xxx' (in your job script) after loading the GDAL module.",
"domains": [
"geo"
],
Expand All @@ -7480,19 +7451,18 @@
"2.4.0-gimkl-2018b",
"3.0.1-gimkl-2018b",
"3.0.4-gimkl-2020a",
"3.0.4-gimkl-2020a",
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"3.5.1-gimpi-2022a",
"3.6.3-gimpi-2022a",
"3.6.4-gompi-2023a"
],
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"default": "3.0.4-gimkl-2020a",
"default": "2.2.2-gimkl-2017a-GEOS-3.5.1",
"default_type": "latest",
"last_updated": 1701401986,
"modulefile_text": "",
"module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/GDAL/3.0.4-gimkl-2020a.lua.bak",
"module_path": "/opt/nesi/CS400_centos7_bdw/modules/geo/GDAL/2.2.2-gimkl-2017a-GEOS-3.5.1.lua",
"force_hide": "False",
"force_show": "False"
},
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"force_hide": "False",
"force_show": "False"
},
"GLibmm": {
"description": "C++ bindings for Glib",
"domains": [
"vis"
],
"extensions": [],
"licence_type": "",
"homepage": "https://www.gtk.org/",
"support": "",
"versions": [
"2.49.7-GCCcore-9.2.0"
],
"admin_list": [],
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"default": "2.49.7-GCCcore-9.2.0",
"default_type": "latest",
"last_updated": 1641943019,
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"module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/GLibmm/2.49.7-GCCcore-9.2.0.lua.bak",
"force_hide": "False",
"force_show": "False"
},
"GlimmerHMM": {
"description": "Gene finder based on a Generalized Hidden Markov Model.",
"domains": [
Expand Down Expand Up @@ -9587,8 +9535,7 @@
"2017a",
"2018b",
"2020a",
"2022a",
"2022a.bak_20220607143405_52098"
"2022a"
],
"admin_list": [
{
Expand Down Expand Up @@ -9667,9 +9614,7 @@
"support": "",
"versions": [
"2022.0.2-gimpi-2022a",
"2022.0.2-gimpi-2022a.bak_20220607142945_173985",
"2022.0.2-iimpi-2022a",
"2022.0.2-iimpi-2022a.bak_20220607143451_64529"
"2022.0.2-iimpi-2022a"
],
"admin_list": [],
"network_licences": [],
Expand Down Expand Up @@ -10917,7 +10862,6 @@
"homepage": "http://ccb.jhu.edu/software/kraken/MANUAL.html",
"support": "",
"versions": [
"2.0.7-beta-gimkl-2017a",
"2.0.8-beta-GCC-9.2.0",
"2.0.8-beta-gimkl-2018b",
"2.0.9-beta-GCC-9.2.0",
Expand All @@ -10932,11 +10876,11 @@
}
],
"network_licences": [],
"default": "2.0.7-beta-gimkl-2017a",
"default": "2.0.8-beta-GCC-9.2.0",
"default_type": "latest",
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"modulefile_text": "",
"module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/Kraken2/2.0.7-beta-gimkl-2017a.lua.bak_20180914175838",
"module_path": "/opt/nesi/CS400_centos7_bdw/modules/bio/Kraken2/2.0.8-beta-GCC-9.2.0.lua",
"force_hide": "False",
"force_show": "False"
},
Expand Down Expand Up @@ -11840,28 +11784,6 @@
"force_hide": "False",
"force_show": "False"
},
"libsigc++": {
"description": "The libsigc++ package implements a typesafe callback system for standard C++.",
"domains": [
"devel"
],
"extensions": [],
"licence_type": "",
"homepage": "https://libsigcplusplus.github.io/libsigcplusplus/",
"support": "",
"versions": [
"2.10.2-GCCcore-7.4.0"
],
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"module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/libsigc++/2.10.2-GCCcore-7.4.0.lua.bak",
"force_hide": "False",
"force_show": "False"
},
"libsodium": {
"description": "library for encryption, decryption, signatures, password hashing and more.",
"domains": [
Expand Down Expand Up @@ -12087,28 +12009,6 @@
"force_hide": "False",
"force_show": "False"
},
"libxml++": {
"description": "libxml++ is a C++ wrapper for the libxml XML parser library.",
"domains": [
"lib"
],
"extensions": [],
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"homepage": "http://libxmlplusplus.sourceforge.net",
"support": "",
"versions": [
"2.40.1-GCCcore-9.2.0"
],
"admin_list": [],
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"default": "2.40.1-GCCcore-9.2.0",
"default_type": "latest",
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"module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/libxml++/2.40.1-GCCcore-9.2.0.lua.bak",
"force_hide": "False",
"force_show": "False"
},
"libxml2": {
"description": "Libxml2 is the XML C parser and \ntoolchain developed for the Gnome project\n (but usable outside of the Gnome platform).",
"domains": [
Expand Down Expand Up @@ -17635,7 +17535,6 @@
"5.30.1-GCC-9.2.0",
"5.30.1-GCC-9.2.0-mt",
"5.34.1-GCC-11.3.0",
"5.34.1-GCC-11.3.0.bak_20220911103921_98668",
"5.38.2-GCC-12.3.0"
],
"admin_list": [
Expand Down Expand Up @@ -18340,12 +18239,14 @@
"bio",
"base"
],
"extensions": [],
"extensions": [
"Bio::SearchIO::hmmer-1.7.3",
"BioPerl-1.7.7"
],
"licence_type": "",
"homepage": "http://www.vicbioinformatics.com/software.prokka.shtml",
"support": "",
"versions": [
"1.13.4-gimkl-2018b",
"1.13.4-gimkl-2018b",
"1.14.5-GCC-11.3.0",
"1.14.5-GCC-9.2.0"
Expand All @@ -18356,11 +18257,11 @@
}
],
"network_licences": [],
"default": "1.13.4-gimkl-2018b",
"default": "1.14.5-GCC-9.2.0",
"default_type": "latest",
"last_updated": 1670200261,
"modulefile_text": "",
"module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/prokka/1.13.4-gimkl-2018b.lua.bak_20190806113620",
"module_path": "/opt/nesi/CS400_centos7_bdw/modules/bio/prokka/1.14.5-GCC-9.2.0.lua",
"force_hide": "False",
"force_show": "False"
},
Expand Down Expand Up @@ -18904,7 +18805,6 @@
"3.6.3-gimkl-2017a",
"3.7.3-gimkl-2018b",
"3.8.1-gimkl-2018b",
"3.8.2-gimkl-2020.bak_20201012101755_139144",
"3.8.2-gimkl-2020a",
"3.9.5-gimkl-2020a",
"3.9.9-gimkl-2020a"
Expand Down Expand Up @@ -18942,6 +18842,7 @@
"GDAL-3.0.4",
"geopandas-0.9.0",
"munch-2.5.0",
"pygeos-0.9",
"pyModis-2.0.9",
"pyproj-2.5.0",
"rasterio-1.2.3",
Expand All @@ -18956,8 +18857,6 @@
"3.10.5-gimkl-2022a",
"3.11.3-gimkl-2022a",
"3.7.3-gimkl-2018b",
"3.8.2-gimkl-2020.bak_20210503142647_57357",
"3.8.2-gimkl-2020.bak_20210504112746_96439",
"3.8.2-gimkl-2020a",
"3.9.5-gimkl-2020a",
"3.9.9-gimkl-2020a"
Expand All @@ -18971,11 +18870,11 @@
}
],
"network_licences": [],
"default": "3.8.2-gimkl-2020.bak_20210504112746_96439",
"default": "3.8.2-gimkl-2020a",
"default_type": "latest",
"last_updated": 1683105477,
"modulefile_text": "",
"module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/Python-Geo/3.8.2-gimkl-2020.bak_20210504112746_96439",
"module_path": "/opt/nesi/CS400_centos7_bdw/modules/geo/Python-Geo/3.8.2-gimkl-2020a.lua",
"force_hide": "False",
"force_show": "False"
},
Expand Down Expand Up @@ -19605,17 +19504,11 @@
"3.5.3-gimkl-2018b",
"3.6.1-gimkl-2018b",
"3.6.2-gimkl-2020a",
"4.0.1-gimkl-2020.bak_20200924153258_158380",
"4.0.1-gimkl-2020.bak_20201125101258_121931",
"4.0.1-gimkl-2020.bak_20210506161555_41355",
"4.0.1-gimkl-2020.bak_20210517124424_7593",
"4.0.1-gimkl-2020a",
"4.0.1-gimkl-2020a-TCLTK",
"4.1.0-gimkl-2020.bak_20210723102350_109125",
"4.1.0-gimkl-2020a",
"4.2.1-gimkl-2022a",
"4.2.1-gimkl-2022a-TCLTK",
"4.2.1-gimkl-2022a.bak_20221006125543_101214",
"4.3.1-gimkl-2022a",
"4.3.2-foss-2023a"
],
Expand Down Expand Up @@ -20507,8 +20400,6 @@
"homepage": "http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page",
"support": "",
"versions": [
"2.0.3-gimkl-2017a",
"2.1-gimkl-2017a",
"3.0beta-gimkl-2017a",
"4.0.1-gimkl-2020a"
],
Expand All @@ -20527,11 +20418,11 @@
}
],
"network_licences": [],
"default": "2.1-gimkl-2017a",
"default": "4.0.1-gimkl-2020a",
"default_type": "latest",
"last_updated": 1698372403,
"modulefile_text": "",
"module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/Relion/2.1-gimkl-2017a.lua.bak_20180822151823",
"module_path": "/opt/nesi/CS400_centos7_bdw/modules/bio/Relion/4.0.1-gimkl-2020a.lua",
"force_hide": "False",
"force_show": "False"
},
Expand Down Expand Up @@ -23943,9 +23834,6 @@
"2.11.0-gimkl-2020a",
"2.13.2-gimkl-2020a",
"2.14.0-gimkl-2022a",
"2.8.4-gimkl-2017a",
"2.8.4-gimkl-2017a",
"2.8.4-gimkl-2017a",
"2.8.4-gimkl-2018b",
"2.8.5-gimkl-2018b",
"2.8.6-gimkl-2020a"
Expand All @@ -23959,11 +23847,11 @@
}
],
"network_licences": [],
"default": "2.8.4-gimkl-2017a",
"default": "2.13.2-gimkl-2020a",
"default_type": "latest",
"last_updated": 1669602209,
"modulefile_text": "",
"module_path": "/opt/nesi/CS400_centos7_bdw/modules/all/Trinity/2.8.4-gimkl-2017a.lua.bak_20181019134759",
"module_path": "/opt/nesi/CS400_centos7_bdw/modules/bio/Trinity/2.13.2-gimkl-2020a.lua",
"force_hide": "False",
"force_show": "False"
},
Expand Down
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