switched to use sratoolkit 2.8.0-2 due to fastq-dump --stdout timing out

nellore · Mar 15, 2018 · 88dfa92 · 88dfa92
1 parent 65c5579
commit 88dfa92
Showing 1 changed file with 6 additions and 6 deletions.
diff --git a/src/dependency_urls.py b/src/dependency_urls.py
@@ -43,10 +43,10 @@
                  '6.0.2.zip',
                  'http://verve.webfactional.com/mirror/linux/'
                  'ipyparallel-6.0.2.zip'],
-    'sra_tools' : ['https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.9.0/'
-                   'sratoolkit.2.9.0-centos_linux64.tar.gz',
+    'sra_tools' : ['http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.8.0/'
+                   'sratoolkit.2.8.0-2-centos_linux64.tar.gz',
                    'http://verve.webfactional.com/mirror/linux/'
-                   'sratoolkit.2.9.0-centos_linux64.tar.gz']
+                   'sratoolkit.2.8.0-2-centos_linux64.tar.gz']
 }
 
 ec2_dependencies = {}
@@ -83,8 +83,8 @@
                      '6.0.2.zip',
                      'http://verve.webfactional.com/mirror/mac/'
                      'ipyparallel-6.0.2.zip'],
-    'sra_tools' : ['http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.8.2/'
-                   'sratoolkit.2.9.0-mac64.tar.gz',
+    'sra_tools' : ['http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.8.0/'
+                   'sratoolkit.2.8.0-2-mac64.tar.gz',
                    'http://verve.webfactional.com/mirror/mac/'
-                   'sratoolkit.2.9.0-mac64.tar.gz']
+                   'sratoolkit.2.8.0-2-mac64.tar.gz']
 }