Merge pull request #17 in STRUC/icn3d from selection to master

* commit '82a725d3cbf16e7da0f5984bc072974080fa1cb1':
  improved selection on structure or sequences, added mol2, sdf, XYZ, and mmCIF file support

README.md

@@ -2,11 +2,11 @@
 
 ## iCn3D
 
-"I see in 3D" (iCn3D) Structure Viewer is a WebGL-based 3D viewer using Three.js and jQuery. It is based on the 3D styles of [iview](http://istar.cse.cuhk.edu.hk/iview/) and [GLmol](http://webglmol.osdn.jp/index-en.html), and the surface generation of [3Dmol](http://3dmol.csb.pitt.edu/). Some of the added/improved features include: picking atoms by mouse, selecting residues on 3D structure or 1D sequence, shiny material for displaying, labeling, saving state, going back and forward, showing highlight with different colors, adding arrows to beta sheets, passing commands in url, sequence window, double bonds for chemicals, full-featured UI, etc.
+"I see in 3D" (iCn3D) Structure Viewer is a WebGL-based 3D viewer using Three.js and jQuery. It is based on the 3D styles of [iview](http://istar.cse.cuhk.edu.hk/iview/) and [GLmol](https://en.osdn.jp/projects/webglmol/), and the surface generation of [3Dmol](http://3dmol.csb.pitt.edu/). Some of the added/improved features include: picking atoms by mouse, selecting residues on 3D structure or 1D sequence, shiny material for displaying, labeling, saving state, going back and forward, showing highlight with different colors, adding arrows to beta sheets, passing commands in url, sequence window, double bonds for chemicals, full-featured UI, etc.
 
-We provided two versions of iCn3D widgets: [simple interface](https://www.ncbi.nlm.nih.gov/Structure/icn3d/index.html?mmdbid=2por) and [advanced interface](https://www.ncbi.nlm.nih.gov/Structure/icn3d/full.html?mmdbid=2por). 
+We provided two versions of iCn3D widgets: [basic interface](https://www.ncbi.nlm.nih.gov/Structure/icn3d/index.html?mmdbid=2por) and [advanced interface](https://www.ncbi.nlm.nih.gov/Structure/icn3d/full.html?mmdbid=2por). 
 
-1. The simple interface has the minimum javascript code for the interface and is easy to understand. It has the basic features such as changing color and styles.
+1. The basic interface has the minimum javascript code for the interface and is easy to understand. It has the basic features such as changing color and styles.
 2. The advanced interface has a library for the interface and is more complicated to understand. It has many features.
 
 Either of these widgets could be easily added to your own web pages. Please see the [help page](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d.html) for more details.
@@ -20,6 +20,7 @@ iCn3D page accepts the following IDs:
 * <b>mmdbid</b>: NCBI MMDB ID, e.g., [https://www.ncbi.nlm.nih.gov/Structure/icn3d/full.html?mmdbid=2por](https://www.ncbi.nlm.nih.gov/Structure/icn3d/full.html?mmdbid=2por)
 * <b>gi</b>: NCBI protein gi number, [https://www.ncbi.nlm.nih.gov/Structure/icn3d/full.html?gi=827343227](https://www.ncbi.nlm.nih.gov/Structure/icn3d/full.html?gi=827343227)
 * <b>cid</b>: PubChem Compound ID, e.g., [https://www.ncbi.nlm.nih.gov/Structure/icn3d/full.html?cid=2244](https://www.ncbi.nlm.nih.gov/Structure/icn3d/full.html?cid=2244)
+* <b>align</b>: Two PDB IDs or MMDB IDs for structure alignment, e.g., [https://www.ncbi.nlm.nih.gov/Structure/icn3d/full.html?align=1hho,4n7n](https://www.ncbi.nlm.nih.gov/Structure/icn3d/full.html?align=1hho,4n7n)
 
 See the [help page](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d.html) for more details on these parameters.
 
@@ -38,7 +39,7 @@ See the [help page](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d.html) for
 
 ## Download
 
-The complete version with all libraries can be downloaded from [https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-0.9.4-dev.zip](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-0.9.4-dev.zip)
+The complete version with all libraries can be downloaded from [https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-0.9.5-dev.zip](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-0.9.5-dev.zip)
 
 ## Contact
 
@@ -92,6 +93,8 @@ gulp gh-pages
 
 ## Change log
 
+The beta version [icn3d-0.9.5-dev](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-0.9.5-dev.zip) was release on April 4, 2016. Enabled to import Mol2, SDF, XYZ, PDB, and mmCIF files. Added "Schematic" style for ligands. Improved the coordination between picking on 3D structure and selection on sequences.
+
 The beta version [icn3d-0.9.4-dev](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-0.9.4-dev.zip) was release on March 14, 2016. Added "Fog" and "Slab" features.
 
 The beta version [icn3d-0.9.3-dev](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-0.9.3-dev.zip) was release on March 9, 2016. Improved the following features: "Back" and "Forward" button, Export State, Open State.