Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Added CDD/client_timeout. #344

Merged
merged 1 commit into from
Dec 19, 2023
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions pages/ch_libconfig.md
Original file line number Diff line number Diff line change
Expand Up @@ -917,6 +917,7 @@ Table 13.5. Object Tools configuration parameters
| Database lock control. By default LDS2 databases are read-only, so they are cached in memory. If an explicit mode is set in the code, this config parameter is ignored. ***Note:*** To set locks the database must be writable. | **`[LDS2]`**<br/>**`DataLoader_Lock`**<br/><br/>**`LDS2_DATALOADER_LOCK`** | "lock", "nolock", or "cache" | "cache" |
| Max number of data files allowed to be kept open by LDS2 file handler. | **`[LDS2]`**<br/>**`MAX_CACHED_STREAMS`**<br/><br/>**`LDS2_MAX_CACHED_STREAMS`** | unsigned integer | 3 |
| Data format to be used by CDD client. | **`[CDD]`**<br/>**`data_format`**<br/><br/>**`NCBI_CONFIG__CDD__DATA_FORMAT`** | "JSON", "semi-binary", or "binary" | "binary" |
| CDD client timeout. | **`[CDD]`**<br/>**`client_timeout`**<br/><br/>**`NCBI_CONFIG__CDD__CLIENT_TIMEOUT`** | floating point \> 0.0 | none - use the default connection timeout |
| Specify whether the new FASTA implementation will be used. | **`[READ_FASTA]`**<br/>**`USE_NEW_IMPLEMENTATION`**<br/><br/>**`NCBI_CONFIG__READ_FASTA__USE_NEW_IMPLEMENTATION`**  [<sup>b</sup>](#ch_libconfig.TF.38) | Boolean  [<sup>a</sup>](#ch_libconfig.TF.37) | true |
| SNP data loader scale limit. | **`[SNP_LOADER]`**<br/>**`SCALE_LIMIT`**<br/><br/>**`SNP_LOADER_SCALE_LIMIT`** | "Chromosome", "Supercontig", "Contig", "Unit", or empty string to use default value ("Chromosome") | empty string |

Expand Down