PD-5181: StxTyper ver. 1.0.28 #264
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: MacOS C++ CI | |
| on: | |
| workflow_dispatch: | |
| push: | |
| pull_request: | |
| repository_dispatch: | |
| types: [mac-compile-test, install-test] | |
| jobs: | |
| build: | |
| runs-on: macos-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: submodule checkout | |
| run: git submodule update --init --recursive | |
| - name: prerequisites | |
| run: | | |
| /bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install.sh)" | |
| brew install blast | |
| brew install hmmer | |
| - name: make | |
| run: make | |
| - name: download db | |
| run: ./amrfinder -u | |
| - name: Software and DB versions | |
| run: | | |
| cat version.txt | |
| ./amrfinder --database_version | |
| - name: make test | |
| run: make test | |
| - name: test for no-overwrite database update (PD-3469 / https://github.com/ncbi/amr/issues/16) | |
| run: ./amrfinder -u 2>&1 | fgrep 'Skipping update' | |
| - name: make github_binaries | |
| run: | | |
| make github_binaries | |
| version=`cat version.txt` | |
| mv amrfinder_binaries_v$version.tar.gz amrfinder_binaries_osx_v$version.txt | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: release-binary | |
| path: amrfinder_binaries_osx_v*.tar.gz |