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Description
main_mm text --metamap=$METAMAP_BIN --output=../test/test.neg.xml ../mimic_cxr/val/p10_p10003502_s51180958_1fa79752-9ddaf5b5-2120ae82-9fec50d6-51f48d1f.txt
{'--bllip-model': None,
'--cuis': 'examples/cuis-cvpr2017.txt',
'--metamap': '/GPUFS/nsccgz_ywang_zfd/caojindong/MetaMap/public_mm_main_2020v2/public_mm/bin/metamap20',
'--neg-patterns': 'negbio/patterns/neg_patterns.txt',
'--newline_is_sentence_break': False,
'--output': '../test/test.neg.xml',
'--split-document': False,
'--uncertainty-patterns': 'negbio/patterns/uncertainty_patterns.txt',
'--verbose': False,
'--word_sense_disambiguation': False,
'SOURCE': [],
'SOURCES': ['../mimic_cxr/val/p10_p10003502_s51180958_1fa79752-9ddaf5b5-2120ae82-9fec50d6-51f48d1f.txt'],
'bioc': False,
'text': True}
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