various fixes

nbeliy · Sep 14, 2016 · 8776a80 · 8776a80
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diff --git a/ds001/CHANGES b/ds001/CHANGES
@@ -1,3 +1,8 @@
+1.0.1 2016-02-18
+
+  -  fixed orientation in nifti headers more consistent left-right determination.
+
+
 1.0.0 2012-07-10
 
   -  initial release
diff --git a/ds001/README b/ds001/README
@@ -12,6 +12,9 @@ Release history:
 
 3/21/2013: Updated release with QA information
 
+2/18/2016: Fixed orientation information in nifti headers for more consistent left-right determination
+
+
 This dataset is made available under the Public Domain Dedication and License 
 v1.0, whose full text can be found at 
 http://www.opendatacommons.org/licenses/pddl/1.0/. 

diff --git a/ds001/dataset_description.json b/ds001/dataset_description.json
@@ -1,5 +1,5 @@
 {
-    "BIDSVersion": "1.0.0rc3",
+    "BIDSVersion": "1.0.0",
     "License": "This dataset is made available under the Public Domain Dedication and License \nv1.0, whose full text can be found at \nhttp://www.opendatacommons.org/licenses/pddl/1.0/. \nWe hope that all users will follow the ODC Attribution/Share-Alike \nCommunity Norms (http://www.opendatacommons.org/norms/odc-by-sa/); \nin particular, while not legally required, we hope that all users \nof the data will acknowledge the OpenfMRI project and NSF Grant \nOCI-1131441 (R. Poldrack, PI) in any publications.",
     "Name": "Balloon Analog Risk Task",
     "ReferencesAndLinks": "Schonberg TS, Fox CR, Mumford JA, Congdon E, Trepel C, Poldrack RA (2012). Decreasing ventromedial prefrontal cortex activity during sequential risk-taking: An fMRI investigation of the Balloon Analogue Risk Task. Frontiers in Decision Neuroscience, 6:80 doi: 10.3389/fnins.2012.00080"

diff --git a/ds001/sub-01/func/sub-01_task-balloonanalogrisktask_run-01_events.tsv b/ds001/sub-01/func/sub-01_task-balloonanalogrisktask_run-01_events.tsv
diff --git a/ds001/sub-01/func/sub-01_task-balloonanalogrisktask_run-02_events.tsv b/ds001/sub-01/func/sub-01_task-balloonanalogrisktask_run-02_events.tsv
diff --git a/ds001/sub-01/func/sub-01_task-balloonanalogrisktask_run-03_events.tsv b/ds001/sub-01/func/sub-01_task-balloonanalogrisktask_run-03_events.tsv
diff --git a/ds001/sub-02/func/sub-02_task-balloonanalogrisktask_run-01_events.tsv b/ds001/sub-02/func/sub-02_task-balloonanalogrisktask_run-01_events.tsv
diff --git a/ds001/sub-02/func/sub-02_task-balloonanalogrisktask_run-02_events.tsv b/ds001/sub-02/func/sub-02_task-balloonanalogrisktask_run-02_events.tsv
diff --git a/ds001/sub-02/func/sub-02_task-balloonanalogrisktask_run-03_events.tsv b/ds001/sub-02/func/sub-02_task-balloonanalogrisktask_run-03_events.tsv
diff --git a/ds001/sub-03/func/sub-03_task-balloonanalogrisktask_run-01_events.tsv b/ds001/sub-03/func/sub-03_task-balloonanalogrisktask_run-01_events.tsv
diff --git a/ds001/sub-03/func/sub-03_task-balloonanalogrisktask_run-02_events.tsv b/ds001/sub-03/func/sub-03_task-balloonanalogrisktask_run-02_events.tsv
diff --git a/ds001/sub-03/func/sub-03_task-balloonanalogrisktask_run-03_events.tsv b/ds001/sub-03/func/sub-03_task-balloonanalogrisktask_run-03_events.tsv
diff --git a/ds001/sub-04/func/sub-04_task-balloonanalogrisktask_run-01_events.tsv b/ds001/sub-04/func/sub-04_task-balloonanalogrisktask_run-01_events.tsv
diff --git a/ds001/sub-04/func/sub-04_task-balloonanalogrisktask_run-02_events.tsv b/ds001/sub-04/func/sub-04_task-balloonanalogrisktask_run-02_events.tsv
diff --git a/ds001/sub-04/func/sub-04_task-balloonanalogrisktask_run-03_events.tsv b/ds001/sub-04/func/sub-04_task-balloonanalogrisktask_run-03_events.tsv
diff --git a/ds001/sub-05/func/sub-05_task-balloonanalogrisktask_run-01_events.tsv b/ds001/sub-05/func/sub-05_task-balloonanalogrisktask_run-01_events.tsv
diff --git a/ds001/sub-05/func/sub-05_task-balloonanalogrisktask_run-02_events.tsv b/ds001/sub-05/func/sub-05_task-balloonanalogrisktask_run-02_events.tsv
diff --git a/ds001/sub-05/func/sub-05_task-balloonanalogrisktask_run-03_events.tsv b/ds001/sub-05/func/sub-05_task-balloonanalogrisktask_run-03_events.tsv
diff --git a/ds001/sub-06/func/sub-06_task-balloonanalogrisktask_run-01_events.tsv b/ds001/sub-06/func/sub-06_task-balloonanalogrisktask_run-01_events.tsv
diff --git a/ds001/sub-06/func/sub-06_task-balloonanalogrisktask_run-02_events.tsv b/ds001/sub-06/func/sub-06_task-balloonanalogrisktask_run-02_events.tsv
diff --git a/ds001/sub-06/func/sub-06_task-balloonanalogrisktask_run-03_events.tsv b/ds001/sub-06/func/sub-06_task-balloonanalogrisktask_run-03_events.tsv
diff --git a/ds001/sub-07/func/sub-07_task-balloonanalogrisktask_run-01_events.tsv b/ds001/sub-07/func/sub-07_task-balloonanalogrisktask_run-01_events.tsv
diff --git a/ds001/sub-07/func/sub-07_task-balloonanalogrisktask_run-02_events.tsv b/ds001/sub-07/func/sub-07_task-balloonanalogrisktask_run-02_events.tsv
diff --git a/ds001/sub-07/func/sub-07_task-balloonanalogrisktask_run-03_events.tsv b/ds001/sub-07/func/sub-07_task-balloonanalogrisktask_run-03_events.tsv
diff --git a/ds001/sub-08/func/sub-08_task-balloonanalogrisktask_run-01_events.tsv b/ds001/sub-08/func/sub-08_task-balloonanalogrisktask_run-01_events.tsv
diff --git a/ds001/sub-08/func/sub-08_task-balloonanalogrisktask_run-02_events.tsv b/ds001/sub-08/func/sub-08_task-balloonanalogrisktask_run-02_events.tsv
diff --git a/ds001/sub-08/func/sub-08_task-balloonanalogrisktask_run-03_events.tsv b/ds001/sub-08/func/sub-08_task-balloonanalogrisktask_run-03_events.tsv
diff --git a/ds001/sub-09/func/sub-09_task-balloonanalogrisktask_run-01_events.tsv b/ds001/sub-09/func/sub-09_task-balloonanalogrisktask_run-01_events.tsv
diff --git a/ds001/sub-09/func/sub-09_task-balloonanalogrisktask_run-02_events.tsv b/ds001/sub-09/func/sub-09_task-balloonanalogrisktask_run-02_events.tsv
diff --git a/ds001/sub-09/func/sub-09_task-balloonanalogrisktask_run-03_events.tsv b/ds001/sub-09/func/sub-09_task-balloonanalogrisktask_run-03_events.tsv
diff --git a/ds001/sub-10/func/sub-10_task-balloonanalogrisktask_run-01_events.tsv b/ds001/sub-10/func/sub-10_task-balloonanalogrisktask_run-01_events.tsv
diff --git a/ds001/sub-10/func/sub-10_task-balloonanalogrisktask_run-02_events.tsv b/ds001/sub-10/func/sub-10_task-balloonanalogrisktask_run-02_events.tsv
diff --git a/ds001/sub-10/func/sub-10_task-balloonanalogrisktask_run-03_events.tsv b/ds001/sub-10/func/sub-10_task-balloonanalogrisktask_run-03_events.tsv
diff --git a/ds001/sub-11/func/sub-11_task-balloonanalogrisktask_run-01_events.tsv b/ds001/sub-11/func/sub-11_task-balloonanalogrisktask_run-01_events.tsv
diff --git a/ds001/sub-11/func/sub-11_task-balloonanalogrisktask_run-02_events.tsv b/ds001/sub-11/func/sub-11_task-balloonanalogrisktask_run-02_events.tsv
diff --git a/ds001/sub-11/func/sub-11_task-balloonanalogrisktask_run-03_events.tsv b/ds001/sub-11/func/sub-11_task-balloonanalogrisktask_run-03_events.tsv
diff --git a/ds001/sub-12/func/sub-12_task-balloonanalogrisktask_run-01_events.tsv b/ds001/sub-12/func/sub-12_task-balloonanalogrisktask_run-01_events.tsv
diff --git a/ds001/sub-12/func/sub-12_task-balloonanalogrisktask_run-02_events.tsv b/ds001/sub-12/func/sub-12_task-balloonanalogrisktask_run-02_events.tsv
diff --git a/ds001/sub-12/func/sub-12_task-balloonanalogrisktask_run-03_events.tsv b/ds001/sub-12/func/sub-12_task-balloonanalogrisktask_run-03_events.tsv
diff --git a/ds001/sub-13/func/sub-13_task-balloonanalogrisktask_run-01_events.tsv b/ds001/sub-13/func/sub-13_task-balloonanalogrisktask_run-01_events.tsv
diff --git a/ds001/sub-13/func/sub-13_task-balloonanalogrisktask_run-02_events.tsv b/ds001/sub-13/func/sub-13_task-balloonanalogrisktask_run-02_events.tsv
diff --git a/ds001/sub-13/func/sub-13_task-balloonanalogrisktask_run-03_events.tsv b/ds001/sub-13/func/sub-13_task-balloonanalogrisktask_run-03_events.tsv
diff --git a/ds001/sub-14/func/sub-14_task-balloonanalogrisktask_run-01_events.tsv b/ds001/sub-14/func/sub-14_task-balloonanalogrisktask_run-01_events.tsv
diff --git a/ds001/sub-14/func/sub-14_task-balloonanalogrisktask_run-02_events.tsv b/ds001/sub-14/func/sub-14_task-balloonanalogrisktask_run-02_events.tsv
diff --git a/ds001/sub-14/func/sub-14_task-balloonanalogrisktask_run-03_events.tsv b/ds001/sub-14/func/sub-14_task-balloonanalogrisktask_run-03_events.tsv
diff --git a/ds001/sub-15/func/sub-15_task-balloonanalogrisktask_run-01_events.tsv b/ds001/sub-15/func/sub-15_task-balloonanalogrisktask_run-01_events.tsv
diff --git a/ds001/sub-15/func/sub-15_task-balloonanalogrisktask_run-02_events.tsv b/ds001/sub-15/func/sub-15_task-balloonanalogrisktask_run-02_events.tsv
diff --git a/ds001/sub-15/func/sub-15_task-balloonanalogrisktask_run-03_events.tsv b/ds001/sub-15/func/sub-15_task-balloonanalogrisktask_run-03_events.tsv
diff --git a/ds001/sub-16/func/sub-16_task-balloonanalogrisktask_run-01_events.tsv b/ds001/sub-16/func/sub-16_task-balloonanalogrisktask_run-01_events.tsv
diff --git a/ds001/sub-16/func/sub-16_task-balloonanalogrisktask_run-02_events.tsv b/ds001/sub-16/func/sub-16_task-balloonanalogrisktask_run-02_events.tsv
diff --git a/ds001/sub-16/func/sub-16_task-balloonanalogrisktask_run-03_events.tsv b/ds001/sub-16/func/sub-16_task-balloonanalogrisktask_run-03_events.tsv
diff --git a/ds002/dataset_description.json b/ds002/dataset_description.json
@@ -1,5 +1,5 @@
 {
-    "BIDSVersion": "1.0.0rc3",
+    "BIDSVersion": "1.0.0",
     "License": "This dataset is made available under the Public Domain Dedication and License \nv1.0, whose full text can be found at \nhttp://www.opendatacommons.org/licenses/pddl/1.0/. \nWe hope that all users will follow the ODC Attribution/Share-Alike \nCommunity Norms (http://www.opendatacommons.org/norms/odc-by-sa/); \nin particular, while not legally required, we hope that all users \nof the data will acknowledge the OpenfMRI project and NSF Grant \nOCI-1131441 (R. Poldrack, PI) in any publications.",
     "Name": "Classification learning",
     "ReferencesAndLinks": "Aron, A.R., Gluck, M.A., Poldrack, R.A. (2006). Long-term test-retest reliability of functional MRI in a classification learning task. Neuroimage, 29(3):1000-6"

diff --git a/ds002/sub-01/anat/sub-01_inplaneT2.nii.gz b/ds002/sub-01/anat/sub-01_inplaneT2.nii.gz
diff --git a/ds002/sub-01/func/sub-01_task-deterministicclassification_run-01_events.tsv b/ds002/sub-01/func/sub-01_task-deterministicclassification_run-01_events.tsv
@@ -1,81 +1,81 @@
-onset	duration	trial_type	feedback	TrialNum	StimCond	StimulusNum	Response	RT	Correct	Feedback
-0.224	2.0	feedback	-1.28	1	2	13	L	1.9240000000000002	0	R
-4.6884999999999994	2.0	feedback	0.72	2	2	12	L	1.999	1	L
-9.187999999999999	2.0	feedback	0.72	3	2	12	L	1.4280000000000002	1	L
-13.6135	2.0	feedback	-1.28	4	2	7	L	1.409	0	R
-18.113	2.0	feedback	0.72	5	2	7	R	0.927	1	R
+onset	duration	trial_type	feedback	TrialNum	StimCond	StimulusNum	Response	response_time	Correct	Feedback
+0.224	2.000	feedback	-1.280	1	2	13	L	1.924	0	R
+4.688	2.000	feedback	0.720	2	2	12	L	1.999	1	L
+9.188	2.000	feedback	0.720	3	2	12	L	1.428	1	L
+13.614	2.000	feedback	-1.280	4	2	7	L	1.409	0	R
+18.113	2.000	feedback	0.720	5	2	7	R	0.927	1	R
 22.678	n/a	n/a	n/a	6	2	0	R	0.743	-	-
-27.177	n/a	n/a	n/a	7	2	0	R	0.41200000000000003	-	-
+27.177	n/a	n/a	n/a	7	2	0	R	0.412	-	-
 31.677	n/a	n/a	n/a	8	2	0	R	0.433	-	-
-36.1865	2.0	feedback	0.72	9	2	11	L	1.9680000000000002	1	L
-40.687	2.0	feedback	0.72	10	2	11	L	1.124	1	L
-45.113	2.0	feedback	0.72	11	2	10	R	1.4069999999999998	1	R
-49.587500000000006	2.0	feedback	-1.28	12	2	3	R	1.214	0	L
-54.1125	2.0	feedback	0.72	13	2	8	L	1.177	1	L
-58.678000000000004	n/a	n/a	n/a	14	2	0	R	0.736	-	-
+36.187	2.000	feedback	0.720	9	2	11	L	1.968	1	L
+40.687	2.000	feedback	0.720	10	2	11	L	1.124	1	L
+45.113	2.000	feedback	0.720	11	2	10	R	1.407	1	R
+49.588	2.000	feedback	-1.280	12	2	3	R	1.214	0	L
+54.112	2.000	feedback	0.720	13	2	8	L	1.177	1	L
+58.678	n/a	n/a	n/a	14	2	0	R	0.736	-	-
 63.177	n/a	n/a	n/a	15	2	0	R	0.374	-	-
-67.67699999999999	n/a	n/a	n/a	16	2	0	R	0.433	-	-
-72.11	2.0	feedback	0.72	17	2	7	R	1.263	1	R
-76.685	2.0	feedback	0.72	18	2	13	R	1.705	1	R
-81.084	2.0	feedback	0.72	19	2	3	L	1.34	1	L
-85.5875	2.0	feedback	-1.28	20	2	2	-	0.0	-1	L
-90.088	2.0	feedback	0.72	21	2	2	L	0.6920000000000001	1	L
-94.70299999999999	n/a	n/a	n/a	22	2	0	R	0.7120000000000001	-	-
-99.182	n/a	n/a	n/a	23	2	0	R	0.33	-	-
+67.677	n/a	n/a	n/a	16	2	0	R	0.433	-	-
+72.110	2.000	feedback	0.720	17	2	7	R	1.263	1	R
+76.685	2.000	feedback	0.720	18	2	13	R	1.705	1	R
+81.084	2.000	feedback	0.720	19	2	3	L	1.340	1	L
+85.588	2.000	feedback	-1.280	20	2	2	-	0.000	-1	L
+90.088	2.000	feedback	0.720	21	2	2	L	0.692	1	L
+94.703	n/a	n/a	n/a	22	2	0	R	0.712	-	-
+99.182	n/a	n/a	n/a	23	2	0	R	0.330	-	-
 103.677	n/a	n/a	n/a	24	2	0	R	0.435	-	-
-108.1095	2.0	feedback	0.72	25	2	10	R	1.026	1	R
-112.612	2.0	feedback	-1.28	26	2	6	L	1.361	0	R
-117.0875	2.0	feedback	-1.28	27	2	1	L	0.934	0	R
-121.61	2.0	feedback	-1.28	28	2	9	R	1.3330000000000002	0	L
-126.1135	2.0	feedback	0.72	29	2	10	R	1.17	1	R
-130.69	n/a	n/a	n/a	30	2	0	R	0.695	-	-
-135.17700000000002	n/a	n/a	n/a	31	2	0	-	0.0	-	-
-139.67600000000002	n/a	n/a	n/a	32	2	0	R	0.365	-	-
-144.1125	2.0	feedback	0.72	33	2	10	R	1.4480000000000002	1	R
-148.584	2.0	feedback	-1.28	34	2	2	-	0.0	-1	L
-153.112	2.0	feedback	0.72	35	2	8	L	1.054	1	L
-157.688	2.0	feedback	-1.28	36	2	13	-	0.0	-1	R
-162.088	2.0	feedback	0.72	37	2	3	L	1.431	1	L
+108.109	2.000	feedback	0.720	25	2	10	R	1.026	1	R
+112.612	2.000	feedback	-1.280	26	2	6	L	1.361	0	R
+117.088	2.000	feedback	-1.280	27	2	1	L	0.934	0	R
+121.610	2.000	feedback	-1.280	28	2	9	R	1.333	0	L
+126.114	2.000	feedback	0.720	29	2	10	R	1.170	1	R
+130.690	n/a	n/a	n/a	30	2	0	R	0.695	-	-
+135.177	n/a	n/a	n/a	31	2	0	-	0.000	-	-
+139.676	n/a	n/a	n/a	32	2	0	R	0.365	-	-
+144.113	2.000	feedback	0.720	33	2	10	R	1.448	1	R
+148.584	2.000	feedback	-1.280	34	2	2	-	0.000	-1	L
+153.112	2.000	feedback	0.720	35	2	8	L	1.054	1	L
+157.688	2.000	feedback	-1.280	36	2	13	-	0.000	-1	R
+162.088	2.000	feedback	0.720	37	2	3	L	1.431	1	L
 166.676	n/a	n/a	n/a	38	2	0	R	0.687	-	-
-171.17700000000002	n/a	n/a	n/a	39	2	0	R	0.37	-	-
+171.177	n/a	n/a	n/a	39	2	0	R	0.370	-	-
 175.676	n/a	n/a	n/a	40	2	0	R	0.551	-	-
-180.187	2.0	feedback	0.72	41	2	11	L	1.15	1	L
-184.61200000000002	2.0	feedback	0.72	42	2	5	L	1.275	1	L
-189.1135	2.0	feedback	-1.28	43	2	10	-	0.0	-1	R
-193.60950000000003	2.0	feedback	-1.28	44	2	6	L	0.9940000000000001	0	R
-198.08749999999998	2.0	feedback	0.72	45	2	1	R	1.4809999999999999	1	R
-202.67700000000002	n/a	n/a	n/a	46	2	0	R	0.7440000000000001	-	-
-207.17700000000002	n/a	n/a	n/a	47	2	0	R	0.355	-	-
-211.678	n/a	n/a	n/a	48	2	0	R	0.47100000000000003	-	-
-216.11	2.0	feedback	-1.28	49	2	5	-	0.0	-1	L
-220.687	2.0	feedback	0.72	50	2	11	L	1.161	1	L
-225.1135	2.0	feedback	0.72	51	2	7	R	2.135	1	R
-229.613	2.0	feedback	0.72	52	2	10	R	0.924	1	R
-234.188	2.0	feedback	0.72	53	2	13	R	1.43	1	R
-238.67700000000002	n/a	n/a	n/a	54	2	0	R	0.8170000000000001	-	-
-243.17700000000002	n/a	n/a	n/a	55	2	0	R	0.405	-	-
+180.187	2.000	feedback	0.720	41	2	11	L	1.150	1	L
+184.612	2.000	feedback	0.720	42	2	5	L	1.275	1	L
+189.113	2.000	feedback	-1.280	43	2	10	-	0.000	-1	R
+193.610	2.000	feedback	-1.280	44	2	6	L	0.994	0	R
+198.087	2.000	feedback	0.720	45	2	1	R	1.481	1	R
+202.677	n/a	n/a	n/a	46	2	0	R	0.744	-	-
+207.177	n/a	n/a	n/a	47	2	0	R	0.355	-	-
+211.678	n/a	n/a	n/a	48	2	0	R	0.471	-	-
+216.110	2.000	feedback	-1.280	49	2	5	-	0.000	-1	L
+220.687	2.000	feedback	0.720	50	2	11	L	1.161	1	L
+225.113	2.000	feedback	0.720	51	2	7	R	2.135	1	R
+229.613	2.000	feedback	0.720	52	2	10	R	0.924	1	R
+234.188	2.000	feedback	0.720	53	2	13	R	1.430	1	R
+238.677	n/a	n/a	n/a	54	2	0	R	0.817	-	-
+243.177	n/a	n/a	n/a	55	2	0	R	0.405	-	-
 247.678	n/a	n/a	n/a	56	2	0	R	0.513	-	-
-252.1135	2.0	feedback	-1.28	57	2	9	R	1.128	0	L
-256.6875	2.0	feedback	-1.28	58	2	12	R	1.5319999999999998	0	L
-261.0875	2.0	feedback	0.72	59	2	3	L	1.484	1	L
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diff --git a/ds002/sub-01/func/sub-01_task-deterministicclassification_run-02_events.tsv b/ds002/sub-01/func/sub-01_task-deterministicclassification_run-02_events.tsv
@@ -1,81 +1,81 @@
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