add JRCFIB2022Mraw template

navis-org · Jul 29, 2023 · 9d4cb7c · 9d4cb7c
1 parent 45577dd
commit 9d4cb7c
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Showing 2 changed files with 48 additions and 3 deletions.
diff --git a/flybrains/data/template_meta.json b/flybrains/data/template_meta.json
@@ -651,10 +651,39 @@
          484680
       ],
       "units": "nanometers",
-      "_navis_units": "8 nanometers",
+      "_navis_units": "nanometers",
       "description": "Full male CNS EM volume currenty being generated by FlyEM at HHMI Janelia Research Campus",
       "doi": "unpublished"
    },
+   {
+      "name": "JRCFIB2022Mraw",
+      "label": "JRCFIB2022Mraw",
+      "type": null,
+      "sex": "M",
+      "dims": [
+         94088,
+         71047,
+         60858
+      ],
+      "voxdims": [
+         8,
+         8,
+         8
+      ],
+      "origin": null,
+      "boundingbox": [
+         0,
+         752704,
+         0,
+         568376,
+         0,
+         484680
+      ],
+      "units": "nanometers",
+      "_navis_units": "8 nanometers",
+      "description": "Uncalibrated version of the full male CNS EM volume currenty being generated by FlyEM at HHMI Janelia Research Campus",
+      "doi": "unpublished"
+   },
    {
       "name": "JRCVNC2018F",
       "label": "JRCVNC2018F",

diff --git a/flybrains/templates.py b/flybrains/templates.py
@@ -30,7 +30,7 @@
            'JFRC2013', 'JFRC2013DS',
            'JRC2018F', 'JRC2018U', 'JRC2018M',
            'JRCFIB2018F', 'JRCFIB2018Fraw', 'JRCFIB2018Fum',
-           'JRCFIB2022M',
+           'JRCFIB2022M', 'JRCFIB2022Mraw',
            'JRCVNC2018F',
            'JRCVNC2018M',
            'JRCVNC2018U',
@@ -725,6 +725,21 @@ class _JRCFIB2022M(FlyTemplateBrain):
 
 JRCFIB2022M = _JRCFIB2022M(**template_meta['JRCFIB2022M'])
 
+class _JRCFIB2022Mraw(_JRCFIB2022M):
+    @property
+    def mesh(self):
+        """On-demand loading of surface mesh."""
+        if not hasattr(self, '_mesh'):
+            # Load the raw mesh (voxels)
+            fp = os.path.join(mesh_filepath, f'JRCFIB2022M.ply')
+            self._mesh = tm.load_mesh(fp)
+            # Convert nanometers to voxels
+            self._mesh.vertices /= 8
+        return self._mesh
+
+JRCFIB2022Mraw = _JRCFIB2022Mraw(**template_meta['JRCFIB2022Mraw'])
+
+
 class _JRCVNC2018F(FlyTemplateBrain):
     """JRC2018 reference ventral nerve chords.
 
@@ -1029,7 +1044,8 @@ def register_templates():
                  JRC2018F, JRC2018U, JRC2018M,
                  JRCVNC2018F, JRCVNC2018U, JRCVNC2018M, VNCIS1,
                  FAFB14, FAFB, FLYWIRE,
-                 JRCFIB2022M, JRCFIB2018F, JRCFIB2018Fraw,
+                 JRCFIB2022M,JRCFIB2022Mraw,
+                 JRCFIB2018F, JRCFIB2018Fraw,
                  FANC, DmelL1CNS_Seymour, COURT2017VNS, COURT2018VNS]
 
     for tmp in templates: