v2.4.0 #73
Merged
v2.4.0 #73
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
… in publishing directory with library_tab since sample_tab doesn't exist anymore.
…logging directory
Automating logging
…rmation from there before join_fastqc
…in workflow to upload to publish dir
…ify suffices for both forward and reverse reads as long as extra text between the prefix (or sample) and suffix.
…iddle regex, and allow parameters to be passed in
Remove concat gzipped
…he hv table to another module
Deduplication on paired reads using clumpify and BBtools deduplication and fragment length analysis
Count duplicate reads using alignment from Bowtie2
added 2 commits
October 18, 2024 15:04
… be binary instead of having the user pass in 0 or 1, and added support for an output path.
willbradshaw
approved these changes
Oct 18, 2024
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
After looking at the commit log between dev and master, it seems that no changes were made to dev other than the ones I made, therefore I believe we're ready to merge this into master. I ran the new dev pipeline on all of Crits Christoph 2021, the output seems to look normal and can be found here (
s3://nao-harmon/test-dedup-cc2021/)