Brought code up-to-date with MSDK

mzmine · Dec 14, 2016 · b4ed287 · b4ed287
1 parent cc45085
commit b4ed287
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/pom.xml b/pom.xml
@@ -180,7 +180,7 @@
 		<dependency>
 			<groupId>io.github.msdk</groupId>
 			<artifactId>msdk-all</artifactId>
-			<version>0.0.7-SNAPSHOT</version>
+			<version>0.0.8-SNAPSHOT</version>
 		</dependency>
 
 	</dependencies>

diff --git a/src/main/java/io/github/mzmine/modules/plots/msspectrum/MsSpectrumPlotWindowController.java b/src/main/java/io/github/mzmine/modules/plots/msspectrum/MsSpectrumPlotWindowController.java
@@ -64,7 +64,7 @@
 import io.github.msdk.datamodel.rawdata.MsFunction;
 import io.github.msdk.datamodel.rawdata.MsScan;
 import io.github.msdk.datamodel.rawdata.RawDataFile;
-import io.github.msdk.io.mgf.MgfExportAlgorithm;
+import io.github.msdk.io.mgf.MgfFileExportMethod;
 import io.github.msdk.io.msp.MspExportAlgorithm;
 import io.github.msdk.io.mzml.MzMLFileExportMethod;
 import io.github.msdk.io.txt.TxtExportAlgorithm;
@@ -846,7 +846,8 @@ public void handleExportMGF(Event event) {
         final File finalFile = file;
         new Thread(() -> {
             try {
-                MgfExportAlgorithm.exportSpectra(finalFile, spectra);
+                MgfFileExportMethod mgfEx = new MgfFileExportMethod(spectra, finalFile);
+                mgfEx.execute();
             } catch (Exception e) {
                 MZmineGUI.displayMessage("Unable to export: " + e.getMessage());
                 e.printStackTrace();