Use prebuilt FMS library (ufs-community#534)

* Remove FMS git submodule * Update module files and top-level CMakeLists.txt to use fms module (library) built by hpc-stack. * Update ci for fms library ufs-community#575 (NCAR#13) Co-authored-by: Minsuk Ji <57227195+MinsukJi-NOAA@users.noreply.github.com>
mzhangw · May 14, 2021 · 9350745 · 9350745
1 parent 6572e78
commit 9350745
Show file tree

Hide file tree

Showing 36 changed files with 2,812 additions and 2,951 deletions.
diff --git a/.gitmodules b/.gitmodules
@@ -6,10 +6,6 @@
   path = NEMS
   url = https://github.com/NOAA-EMC/NEMS
   branch = develop
-[submodule "FMS"]
-  path = FMS
-  url = https://github.com/NOAA-GFDL/FMS
-  branch = release/2020.04
 [submodule "WW3"]
   path = WW3
   url = https://github.com/NOAA-EMC/WW3

diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -1,4 +1,4 @@
-cmake_minimum_required(VERSION 3.15)
+cmake_minimum_required(VERSION 3.18)
 
 project(ufs
         VERSION 1.0
@@ -71,17 +71,6 @@ if(CMAKE_Platform)
   else()
     message("Platform '${CMAKE_Platform}' configuration file does not exist")
   endif()
-
-  # DH* 20210208 temporary workaround for FMS issues on Cheyenne with GNU 9.1.0
-  if (CMAKE_Platform MATCHES "cheyenne.gnu")
-    message("Applying patch cheyenne_gnu_fms_mpp_util_mpi_inc.patch")
-    execute_process(COMMAND patch -N -p0 INPUT_FILE cheyenne_gnu_fms_mpp_util_mpi_inc.patch
-                    WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
-                    OUTPUT_FILE ${CMAKE_CURRENT_BINARY_DIR}/cheyenne_gnu_fms_mpp_util_mpi_inc.patch.out
-                    ERROR_FILE  ${CMAKE_CURRENT_BINARY_DIR}/cheyenne_gnu_fms_mpp_util_mpi_inc.patch.err
-                    RESULT_VARIABLE RC)
-    # *DH 20210208
-  endif()
 endif()
 
 message("")
@@ -118,6 +107,14 @@ if(OPENMP)
 endif()
 find_package(NetCDF REQUIRED C Fortran)
 find_package(ESMF MODULE REQUIRED)
+if(FMS)
+  find_package(FMS REQUIRED COMPONENTS R4 R8)
+  if(32BIT)
+    add_library(fms ALIAS FMS::fms_r4)
+  else()
+    add_library(fms ALIAS FMS::fms_r8)
+  endif()
+endif()
 if(CMEPS)
   find_package(PIO REQUIRED COMPONENTS C Fortran STATIC)
 endif()
@@ -138,24 +135,6 @@ target_link_libraries(nemsio::nemsio INTERFACE w3emc::w3emc_d bacio::bacio_4)
 find_package(Python 3 REQUIRED COMPONENTS Interpreter)
 message("Found Python: ${Python_EXECUTABLE}")
 
-###############################################################################
-### FMS
-###############################################################################
-if(FMS)
-  set(GFS_PHYS ON CACHE BOOL "Enable GFS Physics")
-  if(NOT 32BIT)
-    set(64BIT ON CACHE BOOL "Enable 64-bit")
-  endif()
-
-  add_subdirectory(FMS)
-
-  if(32BIT)
-    add_library(fms ALIAS fms_r4)
-  else()
-    add_library(fms ALIAS fms_r8)
-  endif()
-endif(FMS)
-
 ###############################################################################
 ### stochastic_physics
 ###############################################################################

diff --git a/FMS b/FMS
diff --git a/README.md b/README.md
@@ -18,7 +18,6 @@ The top level directory structure groups source code and input files as follow:
 | --------------            | ------- |
 | ```LICENSE.md```          | A copy of the GNU Lesser General Public License, Version 3. |
 | ```README.md```           | This file with basic pointers to more information. |
-| ```FMS/```                | Contains Flexible Modeling System source code. |
 | ```NEMS/```               | Contains NOAA Environmental Modeling System source code and nems compset run scripts. |
 | ```CMEPS-interface/```    | Contains CMEPS mediator |
 | ```FV3/```                | Contains FV3 atmosphere model component including FV3 dynamical core, dynamics to physics driver, physics and IO. |

diff --git a/cheyenne_gnu_fms_mpp_util_mpi_inc.patch b/cheyenne_gnu_fms_mpp_util_mpi_inc.patch
diff --git a/modulefiles/ufs_cheyenne.gnu b/modulefiles/ufs_cheyenne.gnu
@@ -6,7 +6,7 @@ proc ModulesHelp {} {
 
 module-whatis "loads UFS Model prerequisites for Cheyenne/GNU"
 
-module load cmake/3.16.4
+module load cmake/3.18.2
 
 # load programming environment
 module load ncarenv/1.3

diff --git a/modulefiles/ufs_cheyenne.gnu_debug b/modulefiles/ufs_cheyenne.gnu_debug
@@ -6,7 +6,7 @@ proc ModulesHelp {} {
 
 module-whatis "loads UFS Model prerequisites for Cheyenne/GNU"
 
-module load cmake/3.16.4
+module load cmake/3.18.2
 
 # load programming environment
 module load ncarenv/1.3

diff --git a/modulefiles/ufs_cheyenne.intel b/modulefiles/ufs_cheyenne.intel
@@ -6,7 +6,7 @@ proc ModulesHelp {} {
 
 module-whatis "loads UFS Model prerequisites for Cheyenne/Intel"
 
-module load cmake/3.16.4
+module load cmake/3.18.2
 
 # load programming environment
 module load ncarenv/1.3

diff --git a/modulefiles/ufs_cheyenne.intel_debug b/modulefiles/ufs_cheyenne.intel_debug
@@ -6,7 +6,7 @@ proc ModulesHelp {} {
 
 module-whatis "loads UFS Model prerequisites for Cheyenne/Intel"
 
-module load cmake/3.16.4
+module load cmake/3.18.2
 
 # load programming environment
 module load ncarenv/1.3

diff --git a/modulefiles/ufs_common b/modulefiles/ufs_common
@@ -8,6 +8,7 @@ module load hdf5/1.10.6
 module load netcdf/4.7.4
 module load pio/2.5.2
 module load esmf/8_1_1
+module load fms/2020.04.03
 
 module load bacio/2.4.1
 module load crtm/2.3.0

diff --git a/modulefiles/ufs_common_debug b/modulefiles/ufs_common_debug
@@ -8,6 +8,7 @@ module load hdf5/1.10.6
 module load netcdf/4.7.4
 module load pio/2.5.2
 module load esmf/8_1_1-debug
+module load fms/2020.04.03
 
 module load bacio/2.4.1
 module load crtm/2.3.0

diff --git a/modulefiles/ufs_gaea.intel b/modulefiles/ufs_gaea.intel
@@ -16,7 +16,8 @@ module load cray-python/3.7.3.2
 # Needed at runtime:
 module load alps
 
-module load cmake/3.17.0
+module use /lustre/f2/pdata/ncep_shared/cmake-3.20.1/modulefiles
+module load cmake/3.20.1
 
 #needed for WW3 build
 module load gcc/8.3.0

diff --git a/modulefiles/ufs_gaea.intel_debug b/modulefiles/ufs_gaea.intel_debug
@@ -16,7 +16,8 @@ module load cray-python/3.7.3.2
 # Needed at runtime:
 module load alps
 
-module load cmake/3.17.0
+module use /lustre/f2/pdata/ncep_shared/cmake-3.20.1/modulefiles
+module load cmake/3.20.1
 
 module use /lustre/f2/pdata/esrl/gsd/ufs/hpc-stack-v1.1.0/modulefiles/stack
 

diff --git a/modulefiles/ufs_hera.gnu b/modulefiles/ufs_hera.gnu
@@ -9,10 +9,12 @@ module-whatis "loads UFS Model prerequisites for Hera/GNU"
 module use /contrib/sutils/modulefiles
 module load sutils
 
-module load cmake/3.16.1
-
 module use /scratch2/NCEPDEV/nwprod/hpc-stack/libs/hpc-stack/modulefiles/stack
+
 module load hpc/1.1.0
+
+module load cmake/3.20.0
+
 module load hpc-gnu/9.2.0
 module load hpc-mpich/3.3.2
 

diff --git a/modulefiles/ufs_hera.intel b/modulefiles/ufs_hera.intel
@@ -9,11 +9,12 @@ module-whatis "loads UFS Model prerequisites for Hera/Intel"
 module use /contrib/sutils/modulefiles
 module load sutils
 
-module load cmake/3.16.1
-
 module use /scratch2/NCEPDEV/nwprod/hpc-stack/libs/hpc-stack/modulefiles/stack
 
 module load hpc/1.1.0
+
+module load cmake/3.20.0
+
 module load hpc-intel/18.0.5.274
 module load hpc-impi/2018.0.4
 

diff --git a/modulefiles/ufs_hera.intel_debug b/modulefiles/ufs_hera.intel_debug
@@ -9,11 +9,12 @@ module-whatis "loads UFS Model prerequisites for Hera/Intel"
 module use /contrib/sutils/modulefiles
 module load sutils
 
-module load cmake/3.16.1
-
 module use /scratch2/NCEPDEV/nwprod/hpc-stack/libs/hpc-stack/modulefiles/stack
 
 module load hpc/1.1.0
+
+module load cmake/3.20.0
+
 module load hpc-intel/18.0.5.274
 module load hpc-impi/2018.0.4
 

diff --git a/modulefiles/ufs_jet.intel b/modulefiles/ufs_jet.intel
@@ -9,7 +9,7 @@ module-whatis "loads UFS Model prerequisites for Jet/Intel"
 module use /contrib/sutils/modulefiles
 module load sutils
 
-module load cmake/3.16.1
+module load cmake/3.20.1
 
 module use /lfs4/HFIP/hfv3gfs/nwprod/hpc-stack/libs/modulefiles/stack
 

diff --git a/modulefiles/ufs_jet.intel_debug b/modulefiles/ufs_jet.intel_debug
@@ -9,7 +9,7 @@ module-whatis "loads UFS Model prerequisites for Jet/Intel"
 module use /contrib/sutils/modulefiles
 module load sutils
 
-module load cmake/3.16.1
+module load cmake/3.20.1
 
 module use /lfs4/HFIP/hfv3gfs/nwprod/hpc-stack/libs/modulefiles/stack
 

diff --git a/modulefiles/ufs_orion.intel b/modulefiles/ufs_orion.intel
@@ -8,7 +8,7 @@ module-whatis "loads UFS Model prerequisites for Orion/Intel"
 
 module load contrib noaatools
 
-module load cmake/3.17.3
+module load cmake/3.18.1
 module load python/3.7.5
 
 module use /apps/contrib/NCEP/libs/hpc-stack/modulefiles/stack

diff --git a/modulefiles/ufs_orion.intel_debug b/modulefiles/ufs_orion.intel_debug
@@ -8,7 +8,7 @@ module-whatis "loads UFS Model prerequisites for Orion/Intel"
 
 module load contrib noaatools
 
-module load cmake/3.17.3
+module load cmake/3.18.1
 module load python/3.7.5
 
 module use /apps/contrib/NCEP/libs/hpc-stack/modulefiles/stack

diff --git a/modulefiles/ufs_wcoss_cray b/modulefiles/ufs_wcoss_cray
@@ -22,9 +22,8 @@ module rm NetCDF-intel-sandybridge/4.2
 module load xt-lsfhpc/9.1.3
 module load craype-haswell
 module load python/3.6.3
-module load cmake/3.16.2
 module load gcc/5.3.0
-#
+
 module use /usrx/local/dev/modulefiles
 module load NetCDF-intel-sandybridge/4.7.4
 module load HDF5-parallel-intel-sandybridge/1.10.6
@@ -64,12 +63,14 @@ module load udreg
 module load ugni
 
 module load esmf/811
+module load fms/2020.04.03
 
 module swap pmi pmi/5.0.11
 
 ##
 ## load cmake
 ##
+prepend-path PATH /gpfs/hps3/emc/nems/noscrub/emc.nemspara/soft/cmake/cmake-3.20.1-linux-x86_64/bin
 setenv CC cc
 setenv CXX CC
 setenv FC ftn

diff --git a/modulefiles/ufs_wcoss_cray_debug b/modulefiles/ufs_wcoss_cray_debug
@@ -22,9 +22,8 @@ module rm NetCDF-intel-sandybridge/4.2
 module load xt-lsfhpc/9.1.3
 module load craype-haswell
 module load python/3.6.3
-module load cmake/3.16.2
 module load gcc/5.3.0
-#
+
 module use /usrx/local/dev/modulefiles
 module load NetCDF-intel-sandybridge/4.7.4
 module load HDF5-parallel-intel-sandybridge/1.10.6
@@ -64,12 +63,14 @@ module load udreg
 module load ugni
 
 module load esmf/811-debug
+module load fms/2020.04.03
 
 module swap pmi pmi/5.0.11
 
 ##
 ## load cmake
 ##
+prepend-path PATH /gpfs/hps3/emc/nems/noscrub/emc.nemspara/soft/cmake/cmake-3.20.1-linux-x86_64/bin
 setenv CC cc
 setenv CXX CC
 setenv FC ftn

diff --git a/modulefiles/ufs_wcoss_dell_p3 b/modulefiles/ufs_wcoss_dell_p3
@@ -10,10 +10,11 @@ module load ips/18.0.1.163
 module load impi/18.0.1
 module load lsf/10.1
 module load python/3.6.3
-module load cmake/3.16.2
 
 module use /usrx/local/nceplibs/dev/hpc-stack/libs/hpc-stack/modulefiles/stack
 
+module load cmake/3.20.0
+
 module load hpc/1.1.0
 module load hpc-ips/18.0.1.163
 module load hpc-impi/18.0.1

diff --git a/modulefiles/ufs_wcoss_dell_p3_debug b/modulefiles/ufs_wcoss_dell_p3_debug
@@ -10,10 +10,11 @@ module load ips/18.0.1.163
 module load impi/18.0.1
 module load lsf/10.1
 module load python/3.6.3
-module load cmake/3.16.2
 
 module use /usrx/local/nceplibs/dev/hpc-stack/libs/hpc-stack/modulefiles/stack
 
+module load cmake/3.20.0
+
 module load hpc/1.1.0
 module load hpc-ips/18.0.1.163
 module load hpc-impi/18.0.1