Open
Description
I'm trying to package your module as an rpm package. So I'm using the typical PEP517 based build, install and test cycle used on building packages from non-root account.
python3 -sBm build -w --no-isolation- because I'm calling
buildwith--no-isolationI'm using during all processes only locally installed modules - install .whl file in </install/prefix>
- run pytest with PYTHONPATH pointing to sitearch and sitelib inside </install/prefix>
Because I'm trying to build all my packages only agains what is installed (--no-isolation) and I have jupyter-packaging 0.11.1 I've added the patch:
--- a/pyproject.toml~ 2022-01-11 08:23:50.000000000 +0000
+++ b/pyproject.toml 2022-01-25 20:24:23.103617304 +0000
@@ -1,5 +1,5 @@
[build-system]
-requires = ["jupyter_packaging~=0.7.9", "jupyterlab>=3.0.0,==3.*", "setuptools>=40.8.0", "wheel"]
+requires = ["jupyter_packaging>=0.7.9", "jupyterlab>=3.0.0,==3.*", "setuptools>=40.8.0", "wheel"]
build-backend = "setuptools.build_meta"
[tool.pytest.ini_options]
filterwarnings = [I'm not sure is that caused that pytest is failing. Latest pytets shows at the end few minor warnings.
Here is pytest output:
+ PYTHONPATH=/home/tkloczko/rpmbuild/BUILDROOT/python-jupytext-1.13.6-2.fc35.x86_64/usr/lib64/python3.8/site-packages:/home/tkloczko/rpmbuild/BUILDROOT/python-jupytext-1.13.6-2.fc35.x86_64/usr/lib/python3.8/site-packages
+ /usr/bin/pytest -ra
=========================================================================== test session starts ============================================================================
platform linux -- Python 3.8.12, pytest-6.2.5, py-1.11.0, pluggy-1.0.0
rootdir: /home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6, configfile: pyproject.toml
plugins: anyio-3.3.4, black-0.3.12
collected 2708 items
tests/test_active_cells.py ............................ [ 1%]
tests/test_auto_ext.py ..............................................................x.s....................... [ 4%]
tests/test_black.py ...ssF....... [ 4%]
tests/test_cell_id.py . [ 4%]
tests/test_cell_markers.py .. [ 4%]
tests/test_cell_metadata.py ............................................................ [ 7%]
tests/test_cells.py ................ [ 7%]
tests/test_changelog.py ... [ 7%]
tests/test_cli.py .................................................................................................................................................. [ 13%]
..........FFFF.................................................................................................................................................FF... [ 19%]
s...........................................................................FFFFF..........s................ [ 23%]
tests/test_cli_check.py .. [ 23%]
tests/test_cli_config.py ........... [ 23%]
tests/test_cm_config.py .............. [ 24%]
tests/test_combine.py ................................................... [ 26%]
tests/test_compare.py ..................... [ 26%]
tests/test_config.py .................. [ 27%]
tests/test_contentsmanager.py ....................................................................sssssss........................................................... [ 32%]
.................................................................................................................................................................... [ 38%]
......................................................................................................................................F..s.......................... [ 44%]
...........ss [ 45%]
tests/test_custom_cell_magics.py . [ 45%]
tests/test_doc_files_are_notebooks.py ............... [ 45%]
tests/test_doxygen.py .......... [ 46%]
tests/test_escape_magics.py ................................................................................ [ 49%]
tests/test_execute.py ..FFFFsF [ 49%]
tests/test_formats.py ............................ [ 50%]
tests/test_header.py .......... [ 50%]
tests/test_hide_remove_input_outputs_rmarkdown.py ........ [ 50%]
tests/test_invalid_file.py ... [ 51%]
tests/test_ipynb_to_R.py .... [ 51%]
tests/test_ipynb_to_myst.py .......ss... [ 51%]
tests/test_ipynb_to_py.py .................... [ 52%]
tests/test_ipynb_to_rmd.py ........................ [ 53%]
tests/test_isort.py s [ 53%]
tests/test_jupytext_errors.py .. [ 53%]
tests/test_jupytext_nbconvert_round_trip.py ....................... [ 54%]
tests/test_jupytext_read.py .. [ 54%]
tests/test_knitr_spin.py . [ 54%]
tests/test_load_multiple.py .. [ 54%]
tests/test_markdown_in_code_cells.py .... [ 54%]
tests/test_metadata_filter.py ................. [ 55%]
tests/test_metadata_filters_from_config.py . [ 55%]
tests/test_mirror.py ............................................................................................................................................... [ 60%]
.......................................................................................FFFFFFFFFFFFFFFFFsssssss...........................................ssssssssss [ 66%]
s...............ss.................................................................................................... [ 70%]
tests/test_nbformat_version.py ....... [ 71%]
tests/test_paired_paths.py ...................... [ 72%]
tests/test_pep8.py ............................................................................................................................. [ 76%]
tests/test_pre_commit_0_ipynb_to_py.py s [ 76%]
tests/test_pre_commit_1_sync.py s [ 76%]
tests/test_pre_commit_1_sync_with_config.py s [ 76%]
tests/test_pre_commit_2_sync_nbstripout.py s [ 76%]
tests/test_pre_commit_3_sync_black_nbstripout.py s [ 76%]
tests/test_pre_commit_4_sync_execute.py s [ 76%]
tests/test_pre_commit_5_reformat_markdown.py s [ 76%]
tests/test_pre_commit_mode.py ............ [ 77%]
tests/test_pre_commit_scripts.py ....s... [ 77%]
tests/test_preserve_empty_cells.py ....... [ 77%]
tests/test_pytest.py .. [ 77%]
tests/test_raw_strings.py ......... [ 78%]
tests/test_read_all_py.py .................................................................................................................... [ 82%]
tests/test_read_dotnet_try_markdown.py ... [ 82%]
tests/test_read_empty_text_notebook.py .......................s........... [ 84%]
tests/test_read_folding_markers.py ..... [ 84%]
tests/test_read_incomplete_rmd.py ... [ 84%]
tests/test_read_simple_R.py ............ [ 84%]
tests/test_read_simple_clojure.py . [ 84%]
tests/test_read_simple_csharp.py ....... [ 85%]
tests/test_read_simple_groovy.py . [ 85%]
tests/test_read_simple_hydrogen.py ....... [ 85%]
tests/test_read_simple_ipynb.py . [ 85%]
tests/test_read_simple_java.py . [ 85%]
tests/test_read_simple_julia.py . [ 85%]
tests/test_read_simple_markdown.py .................................... [ 86%]
tests/test_read_simple_matlab.py .. [ 86%]
tests/test_read_simple_nomarker.py .. [ 86%]
tests/test_read_simple_ocaml.py .. [ 87%]
tests/test_read_simple_pandoc.py ....s [ 87%]
tests/test_read_simple_percent.py ...................... [ 87%]
tests/test_read_simple_python.py ................................................ [ 89%]
tests/test_read_simple_quarto.py s [ 89%]
tests/test_read_simple_rmd.py .......... [ 90%]
tests/test_read_simple_rust.py ... [ 90%]
tests/test_read_simple_scheme.py . [ 90%]
tests/test_read_simple_sphinx.py ... [ 90%]
tests/test_read_write_functions.py ..... [ 90%]
tests/test_rmd_to_ipynb.py ...... [ 90%]
tests/test_save_multiple.py ..................................................... [ 92%]
tests/test_stringparser.py .... [ 92%]
tests/test_trust_notebook.py ................................................. [ 94%]
tests/test_unicode.py ............................... [ 95%]
tests/test_using_cli.py F [ 95%]
tests/test_write_does_not_modify_notebook.py .............................................................................................................. [100%]
================================================================================= FAILURES =================================================================================
_________________ test_apply_black_through_jupytext[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/Line_breaks_in_LateX_305.ipynb] _________________
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_apply_black_through_jupyt0')
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/Line_breaks_in_LateX_305.ipynb'
@requires_black
@pytest.mark.parametrize("nb_file", list_notebooks("ipynb_py")[:1])
def test_apply_black_through_jupytext(tmpdir, nb_file):
# Load real notebook metadata to get the 'auto' extension in --pipe-fmt to work
metadata = read(nb_file).metadata
nb_org = new_notebook(
cells=[new_code_cell("1 +1", id="cell-id")], metadata=metadata
)
nb_black = new_notebook(
cells=[new_code_cell("1 + 1", id="cell-id")], metadata=metadata
)
tmp_ipynb = str(tmpdir.mkdir("notebook_folder").join("notebook.ipynb"))
tmp_py = str(tmpdir.mkdir("script_folder").join("notebook.py"))
# Black in place
write(nb_org, tmp_ipynb)
jupytext([tmp_ipynb, "--pipe", "black"])
nb_now = read(tmp_ipynb)
compare_notebooks(nb_now, nb_black, compare_ids=True)
# Write to another folder using dots
write(nb_org, tmp_ipynb)
jupytext([tmp_ipynb, "--to", "../script_folder//py:percent", "--pipe", "black"])
assert os.path.isfile(tmp_py)
nb_now = read(tmp_py)
nb_now.metadata = metadata
compare_notebooks(nb_now, nb_black)
os.remove(tmp_py)
# Map to another folder based on file name
write(nb_org, tmp_ipynb)
> jupytext(
[
tmp_ipynb,
"--from",
"notebook_folder//ipynb",
"--to",
"script_folder//py:percent",
"--pipe",
"black",
"--check",
"flake8",
]
)
tests/test_black.py:124:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
jupytext/cli.py:669: in jupytext_single_file
pipe_notebook(
jupytext/cli.py:1191: in pipe_notebook
cmd_output = exec_command(
jupytext/cli.py:1113: in exec_command
process = subprocess.Popen(
/usr/lib64/python3.8/subprocess.py:858: in __init__
self._execute_child(args, executable, preexec_fn, close_fds,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <subprocess.Popen object at 0x7f0b2f89d850>, args = ['flake8', '-'], executable = b'flake8', preexec_fn = None, close_fds = True, pass_fds = (), cwd = None
env = None, startupinfo = None, creationflags = 0, shell = False, p2cread = 14, p2cwrite = 15, c2pread = 16, c2pwrite = 17, errread = -1, errwrite = -1
restore_signals = True, start_new_session = False
def _execute_child(self, args, executable, preexec_fn, close_fds,
pass_fds, cwd, env,
startupinfo, creationflags, shell,
p2cread, p2cwrite,
c2pread, c2pwrite,
errread, errwrite,
restore_signals, start_new_session):
"""Execute program (POSIX version)"""
if isinstance(args, (str, bytes)):
args = [args]
elif isinstance(args, os.PathLike):
if shell:
raise TypeError('path-like args is not allowed when '
'shell is true')
args = [args]
else:
args = list(args)
if shell:
# On Android the default shell is at '/system/bin/sh'.
unix_shell = ('/system/bin/sh' if
hasattr(sys, 'getandroidapilevel') else '/bin/sh')
args = [unix_shell, "-c"] + args
if executable:
args[0] = executable
if executable is None:
executable = args[0]
sys.audit("subprocess.Popen", executable, args, cwd, env)
if (_USE_POSIX_SPAWN
and os.path.dirname(executable)
and preexec_fn is None
and not close_fds
and not pass_fds
and cwd is None
and (p2cread == -1 or p2cread > 2)
and (c2pwrite == -1 or c2pwrite > 2)
and (errwrite == -1 or errwrite > 2)
and not start_new_session):
self._posix_spawn(args, executable, env, restore_signals,
p2cread, p2cwrite,
c2pread, c2pwrite,
errread, errwrite)
return
orig_executable = executable
# For transferring possible exec failure from child to parent.
# Data format: "exception name:hex errno:description"
# Pickle is not used; it is complex and involves memory allocation.
errpipe_read, errpipe_write = os.pipe()
# errpipe_write must not be in the standard io 0, 1, or 2 fd range.
low_fds_to_close = []
while errpipe_write < 3:
low_fds_to_close.append(errpipe_write)
errpipe_write = os.dup(errpipe_write)
for low_fd in low_fds_to_close:
os.close(low_fd)
try:
try:
# We must avoid complex work that could involve
# malloc or free in the child process to avoid
# potential deadlocks, thus we do all this here.
# and pass it to fork_exec()
if env is not None:
env_list = []
for k, v in env.items():
k = os.fsencode(k)
if b'=' in k:
raise ValueError("illegal environment variable name")
env_list.append(k + b'=' + os.fsencode(v))
else:
env_list = None # Use execv instead of execve.
executable = os.fsencode(executable)
if os.path.dirname(executable):
executable_list = (executable,)
else:
# This matches the behavior of os._execvpe().
executable_list = tuple(
os.path.join(os.fsencode(dir), executable)
for dir in os.get_exec_path(env))
fds_to_keep = set(pass_fds)
fds_to_keep.add(errpipe_write)
self.pid = _posixsubprocess.fork_exec(
args, executable_list,
close_fds, tuple(sorted(map(int, fds_to_keep))),
cwd, env_list,
p2cread, p2cwrite, c2pread, c2pwrite,
errread, errwrite,
errpipe_read, errpipe_write,
restore_signals, start_new_session, preexec_fn)
self._child_created = True
finally:
# be sure the FD is closed no matter what
os.close(errpipe_write)
self._close_pipe_fds(p2cread, p2cwrite,
c2pread, c2pwrite,
errread, errwrite)
# Wait for exec to fail or succeed; possibly raising an
# exception (limited in size)
errpipe_data = bytearray()
while True:
part = os.read(errpipe_read, 50000)
errpipe_data += part
if not part or len(errpipe_data) > 50000:
break
finally:
# be sure the FD is closed no matter what
os.close(errpipe_read)
if errpipe_data:
try:
pid, sts = os.waitpid(self.pid, 0)
if pid == self.pid:
self._handle_exitstatus(sts)
else:
self.returncode = sys.maxsize
except ChildProcessError:
pass
try:
exception_name, hex_errno, err_msg = (
errpipe_data.split(b':', 2))
# The encoding here should match the encoding
# written in by the subprocess implementations
# like _posixsubprocess
err_msg = err_msg.decode()
except ValueError:
exception_name = b'SubprocessError'
hex_errno = b'0'
err_msg = 'Bad exception data from child: {!r}'.format(
bytes(errpipe_data))
child_exception_type = getattr(
builtins, exception_name.decode('ascii'),
SubprocessError)
if issubclass(child_exception_type, OSError) and hex_errno:
errno_num = int(hex_errno, 16)
child_exec_never_called = (err_msg == "noexec")
if child_exec_never_called:
err_msg = ""
# The error must be from chdir(cwd).
err_filename = cwd
else:
err_filename = orig_executable
if errno_num != 0:
err_msg = os.strerror(errno_num)
> raise child_exception_type(errno_num, err_msg, err_filename)
E FileNotFoundError: [Errno 2] No such file or directory: 'flake8'
/usr/lib64/python3.8/subprocess.py:1704: FileNotFoundError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_apply_black_through_jupyt0/notebook_folder/notebook.ipynb in format ipynb
[jupytext] Executing black -
[jupytext] Writing /tmp/pytest-of-tkloczko/pytest-128/test_apply_black_through_jupyt0/notebook_folder/notebook.ipynb
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_apply_black_through_jupyt0/notebook_folder/notebook.ipynb in format ipynb
[jupytext] Executing black -
[jupytext] Writing /tmp/pytest-of-tkloczko/pytest-128/test_apply_black_through_jupyt0/script_folder/notebook.py in format ../script_folder//py:percent
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_apply_black_through_jupyt0/notebook_folder/notebook.ipynb in format notebook_folder//ipynb
[jupytext] Executing black -
[jupytext] Executing flake8 -
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
reformatted -
All done! ✨ 🍰 ✨
1 file reformatted.
reformatted -
All done! ✨ 🍰 ✨
1 file reformatted.
reformatted -
All done! ✨ 🍰 ✨
1 file reformatted.
______________________________ test_set_kernel_inplace[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/light_sample.py] _______________________________
py_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/light_sample.py'
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_set_kernel_inplace__home_0')
@pytest.mark.parametrize("py_file", list_notebooks("python"))
def test_set_kernel_inplace(py_file, tmpdir):
tmp_py = str(tmpdir.join("notebook.py"))
copyfile(py_file, tmp_py)
> jupytext([tmp_py, "--set-kernel", "-"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:448:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_set_kernel_inplace__home_0/notebook.py in format py
_________________________ test_set_kernel_inplace[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/python_notebook_sample.py] __________________________
py_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/python_notebook_sample.py'
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_set_kernel_inplace__home_1')
@pytest.mark.parametrize("py_file", list_notebooks("python"))
def test_set_kernel_inplace(py_file, tmpdir):
tmp_py = str(tmpdir.join("notebook.py"))
copyfile(py_file, tmp_py)
> jupytext([tmp_py, "--set-kernel", "-"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:448:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_set_kernel_inplace__home_1/notebook.py in format py
________________________________ test_set_kernel_auto[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/light_sample.py] ________________________________
py_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/light_sample.py'
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_set_kernel_auto__home_tkl0')
@pytest.mark.parametrize("py_file", list_notebooks("python"))
def test_set_kernel_auto(py_file, tmpdir):
tmp_py = str(tmpdir.join("notebook.py"))
tmp_ipynb = str(tmpdir.join("notebook.ipynb"))
copyfile(py_file, tmp_py)
> jupytext(["--to", "ipynb", tmp_py, "--set-kernel", "-"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:463:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_set_kernel_auto__home_tkl0/notebook.py in format py
___________________________ test_set_kernel_auto[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/python_notebook_sample.py] ___________________________
py_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/python_notebook_sample.py'
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_set_kernel_auto__home_tkl1')
@pytest.mark.parametrize("py_file", list_notebooks("python"))
def test_set_kernel_auto(py_file, tmpdir):
tmp_py = str(tmpdir.join("notebook.py"))
tmp_ipynb = str(tmpdir.join("notebook.ipynb"))
copyfile(py_file, tmp_py)
> jupytext(["--to", "ipynb", tmp_py, "--set-kernel", "-"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:463:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_set_kernel_auto__home_tkl1/notebook.py in format py
___________________________________________________________________ test_set_kernel_works_with_pipes_326 ___________________________________________________________________
capsys = <_pytest.capture.CaptureFixture object at 0x7f0b2f3e0e80>
def test_set_kernel_works_with_pipes_326(capsys):
md = u"""```python
1 + 1
```"""
with mock.patch("sys.stdin", StringIO(md)):
> jupytext(["--to", "ipynb", "--set-kernel", "-", "-"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:682:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
____________________________________________________________________________ test_utf8_out_331 _____________________________________________________________________________
capsys = <_pytest.capture.CaptureFixture object at 0x7f0b2f304c70>, caplog = <_pytest.logging.LogCaptureFixture object at 0x7f0b2f304040>
@skip_on_windows
@pytest.mark.filterwarnings("ignore")
def test_utf8_out_331(capsys, caplog):
py = u"from IPython.core.display import HTML; HTML(u'\xd7')"
with mock.patch("sys.stdin", StringIO(py)):
> jupytext(["--to", "ipynb", "--execute", "-"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:696:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
__________________________________________________________ test_create_header_with_set_formats_and_set_kernel[md] __________________________________________________________
format_name = 'md', tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo3')
cwd_tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo3')
@requires_myst
@requires_pandoc
@pytest.mark.parametrize(
"format_name", ["md", "md:myst", "md:pandoc", "py:light", "py:percent"]
)
def test_create_header_with_set_formats_and_set_kernel(format_name, tmpdir, cwd_tmpdir):
"""Test jupytext --set-formats <format_name> --set-kernel - #485"""
ext = format_name.split(":")[0]
tmp_nb = "notebook." + ext
tmpdir.join(tmp_nb).write("\n")
> jupytext(["--set-formats", format_name, "--set-kernel", "-", tmp_nb])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:1033:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading notebook.md in format md
_______________________________________________________ test_create_header_with_set_formats_and_set_kernel[md:myst] ________________________________________________________
format_name = 'md:myst', tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo4')
cwd_tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo4')
@requires_myst
@requires_pandoc
@pytest.mark.parametrize(
"format_name", ["md", "md:myst", "md:pandoc", "py:light", "py:percent"]
)
def test_create_header_with_set_formats_and_set_kernel(format_name, tmpdir, cwd_tmpdir):
"""Test jupytext --set-formats <format_name> --set-kernel - #485"""
ext = format_name.split(":")[0]
tmp_nb = "notebook." + ext
tmpdir.join(tmp_nb).write("\n")
> jupytext(["--set-formats", format_name, "--set-kernel", "-", tmp_nb])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:1033:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading notebook.md in format md
______________________________________________________ test_create_header_with_set_formats_and_set_kernel[md:pandoc] _______________________________________________________
format_name = 'md:pandoc', tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo5')
cwd_tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo5')
@requires_myst
@requires_pandoc
@pytest.mark.parametrize(
"format_name", ["md", "md:myst", "md:pandoc", "py:light", "py:percent"]
)
def test_create_header_with_set_formats_and_set_kernel(format_name, tmpdir, cwd_tmpdir):
"""Test jupytext --set-formats <format_name> --set-kernel - #485"""
ext = format_name.split(":")[0]
tmp_nb = "notebook." + ext
tmpdir.join(tmp_nb).write("\n")
> jupytext(["--set-formats", format_name, "--set-kernel", "-", tmp_nb])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:1033:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading notebook.md in format md
_______________________________________________________ test_create_header_with_set_formats_and_set_kernel[py:light] _______________________________________________________
format_name = 'py:light', tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo6')
cwd_tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo6')
@requires_myst
@requires_pandoc
@pytest.mark.parametrize(
"format_name", ["md", "md:myst", "md:pandoc", "py:light", "py:percent"]
)
def test_create_header_with_set_formats_and_set_kernel(format_name, tmpdir, cwd_tmpdir):
"""Test jupytext --set-formats <format_name> --set-kernel - #485"""
ext = format_name.split(":")[0]
tmp_nb = "notebook." + ext
tmpdir.join(tmp_nb).write("\n")
> jupytext(["--set-formats", format_name, "--set-kernel", "-", tmp_nb])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:1033:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading notebook.py in format py
______________________________________________________ test_create_header_with_set_formats_and_set_kernel[py:percent] ______________________________________________________
format_name = 'py:percent', tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo7')
cwd_tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo7')
@requires_myst
@requires_pandoc
@pytest.mark.parametrize(
"format_name", ["md", "md:myst", "md:pandoc", "py:light", "py:percent"]
)
def test_create_header_with_set_formats_and_set_kernel(format_name, tmpdir, cwd_tmpdir):
"""Test jupytext --set-formats <format_name> --set-kernel - #485"""
ext = format_name.split(":")[0]
tmp_nb = "notebook." + ext
tmpdir.join(tmp_nb).write("\n")
> jupytext(["--set-formats", format_name, "--set-kernel", "-", tmp_nb])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:1033:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading notebook.py in format py
_________________________ test_python_kernel_preserves_R_files[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/R/simple_r_script.R] __________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/R/simple_r_script.R'
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_python_kernel_preserves_R0')
@pytest.mark.parametrize("nb_file", list_notebooks("R"))
def test_python_kernel_preserves_R_files(nb_file, tmpdir):
"""Opening a R file with a Jupyter server that has no R kernel should not modify the file"""
tmp_r_file = str(tmpdir.join("script.R"))
with open(nb_file) as fp:
script = fp.read()
with open(tmp_r_file, "w") as fp:
fp.write(script)
# create contents manager
cm = jupytext.TextFileContentsManager()
cm.root_dir = str(tmpdir)
# open notebook, set Python kernel and save
model = cm.get("script.R")
> model["content"].metadata["kernelspec"] = kernelspec_from_language("python")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_contentsmanager.py:1235:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
_______________________________________________________________________________ test_execute _______________________________________________________________________________
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_execute0'), caplog = <_pytest.logging.LogCaptureFixture object at 0x7f0b2e01d190>
capsys = <_pytest.capture.CaptureFixture object at 0x7f0b2e01dee0>
@requires_nbconvert
@skip_on_windows
def test_execute(tmpdir, caplog, capsys):
tmp_ipynb = str(tmpdir.join("notebook.ipynb"))
tmp_py = str(tmpdir.join("notebook.py"))
with open(tmp_py, "w") as fp:
fp.write(
"""1 + 2
"""
)
> jupytext(args=[tmp_py, "--to", "ipynb", "--execute"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_execute.py:82:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_execute0/notebook.py in format py
__________________________________________________________________________ test_execute_readme_ok __________________________________________________________________________
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_execute_readme_ok0')
@requires_nbconvert
def test_execute_readme_ok(tmpdir):
tmp_md = str(tmpdir.join("notebook.md"))
with open(tmp_md, "w") as fp:
fp.write(
"""
A readme with correct instructions
```python
1 + 2
```
"""
)
> jupytext(args=[tmp_md, "--execute"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_execute.py:104:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_execute_readme_ok0/notebook.md in format md
________________________________________________________________________ test_execute_readme_not_ok ________________________________________________________________________
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_execute_readme_not_ok0')
@requires_nbconvert
@skip_on_windows
def test_execute_readme_not_ok(tmpdir):
tmp_md = str(tmpdir.join("notebook.md"))
with open(tmp_md, "w") as fp:
fp.write(
"""
A readme with incorrect instructions (a is not defined)
```python
a + 1
```
"""
)
import nbconvert
with pytest.raises(
nbconvert.preprocessors.execute.CellExecutionError, match="is not defined"
):
> jupytext(args=[tmp_md, "--execute"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_execute.py:128:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_execute_readme_not_ok0/notebook.md in format md
____________________________________________________________________________ test_execute_sync _____________________________________________________________________________
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_execute_sync0'), caplog = <_pytest.logging.LogCaptureFixture object at 0x7f0b2f72f280>
capsys = <_pytest.capture.CaptureFixture object at 0x7f0b2f72fa90>
@requires_nbconvert
@skip_on_windows
def test_execute_sync(tmpdir, caplog, capsys):
tmp_ipynb = str(tmpdir.join("notebook.ipynb"))
tmp_py = str(tmpdir.join("notebook.py"))
with open(tmp_py, "w") as fp:
fp.write(
"""1 + 2
"""
)
> jupytext(args=[tmp_py, "--set-formats", "py,ipynb", "--sync", "--execute"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_execute.py:143:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_execute_sync0/notebook.py in format py
________________________________________________________________________ test_execute_in_subfolder _________________________________________________________________________
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_execute_in_subfolder0'), caplog = <_pytest.logging.LogCaptureFixture object at 0x7f0b2dd9cd00>
capsys = <_pytest.capture.CaptureFixture object at 0x7f0b2dd9cee0>
@requires_nbconvert
@skip_on_windows
def test_execute_in_subfolder(tmpdir, caplog, capsys):
subfolder = tmpdir.mkdir("subfolder")
tmp_csv = str(subfolder.join("inputs.csv"))
tmp_py = str(subfolder.join("notebook.py"))
tmp_ipynb = str(subfolder.join("notebook.ipynb"))
with open(tmp_csv, "w") as fp:
fp.write("1\n2\n")
with open(tmp_py, "w") as fp:
fp.write(
"""import ast
with open('inputs.csv') as fp:
text = fp.read()
sum(ast.literal_eval(line) for line in text.splitlines())
"""
)
> jupytext(args=[tmp_py, "--to", "ipynb", "--execute"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_execute.py:195:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_execute_in_subfolder0/subfolder/notebook.py in format py
__________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_julia/julia_benchmark_plotly_barchart.ipynb] ___________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_julia/julia_benchmark_plotly_barchart.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Julia 1.1.1\n language: julia\n name: julia-1.1\n nbformat: 4\...\n response["url"],\n "/700/700\' width=\'750\'></iframe>")\ndisplay("text/html", s)\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Julia 1.1.1\n language: julia\n name: julia-1.1\n nbformat: 4\...\n response["url"],\n "/700/700\' width=\'750\'></iframe>")\ndisplay("text/html", s)\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -9,7 +9,7 @@
E ---
E
E ::: {.cell .code}
E -``` {.julia}
E +``` julia
E # IJulia rocks! So does Plotly. Check it out
E
E using Plotly
E @@ -21,7 +21,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.julia}
E +``` julia
E # Following data taken from http://julialang.org/ frontpage
E benchmarks = ["fib", "parse_int", "quicksort3", "mandel", "pi_sum", "rand_mat_stat", "rand_mat_mul"]
E platforms = ["Fortran", "Julia", "Python", "R", "Matlab", "Mathematica", "Javascript", "Go"]
E @@ -70,7 +70,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.julia}
E +``` julia
E # checkout https://plot.ly/api/ for more Julia examples!
E # But to show off some other Plotly features:
E x = 1:1500
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
_________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/Notebook_with_R_magic.ipynb] _________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/Notebook_with_R_magic.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 2\n language: python\n name: python2\n nbformat: 4\n n...on\n%%R -w 400 -h 240\nggplot(iris, aes(x = Sepal.Length, y = Petal.Length, color=Species)) + geom_point()\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 2\n language: python\n name: python2\n nbformat: 4\n n...n}\n%%R -w 400 -h 240\nggplot(iris, aes(x = Sepal.Length, y = Petal.Length, color=Species)) + geom_point()\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -15,20 +15,20 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E %load_ext rpy2.ipython
E ```
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E %%R
E suppressMessages(require(tidyverse))
E ```
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E %%R
E ggplot(iris, aes(x = Sepal.Length, y = Petal.Length, color=Species)) + geom_point()
E ```
E @@ -39,7 +39,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E %%R -w 400 -h 240
E ggplot(iris, aes(x = Sepal.Length, y = Petal.Length, color=Species)) + geom_point()
E ```
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
____________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/Notebook_with_more_R_magic_111.ipynb] _____________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/Notebook_with_more_R_magic_111.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...%%R -i df\nlibrary("ggplot2")\nggplot(data = df) + geom_point(aes(x = X, y = Y, color = Letter, size = Z))\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...%%R -i df\nlibrary("ggplot2")\nggplot(data = df) + geom_point(aes(x = X, y = Y, color = Letter, size = Z))\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -9,7 +9,7 @@
E ---
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E %load_ext rpy2.ipython
E import pandas as pd
E
E @@ -25,7 +25,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E %%R -i df
E library("ggplot2")
E ggplot(data = df) + geom_point(aes(x = X, y = Y, color = Letter, size = Z))
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
___________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/World population.ipynb] ____________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/World population.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = "---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...o.Layout(title='World population',\n barmode='stack'))\noffline.iplot(fig)\n```\n:::\n"
expected = "---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...o.Layout(title='World population',\n barmode='stack'))\noffline.iplot(fig)\n```\n:::\n"
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -19,7 +19,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E import pandas as pd
E import wbdata as wb
E
E @@ -34,7 +34,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E wb.search_indicators('Population, total') # SP.POP.TOTL
E # wb.search_indicators('area')
E # => https://data.worldbank.org/indicator is easier to use
E @@ -46,7 +46,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E indicators = {'SP.POP.TOTL': 'Population, total',
E 'AG.SRF.TOTL.K2': 'Surface area (sq. km)',
E 'AG.LND.TOTL.K2': 'Land area (sq. km)',
E @@ -61,7 +61,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E data.loc['World']
E ```
E :::
E @@ -71,7 +71,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E data.loc[(slice(None), '2017-01-01'), :]['Population, total'].dropna(
E ).sort_values().tail(60).index.get_level_values('country')
E ```
E @@ -82,7 +82,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E zones = ['North America', 'Middle East & North Africa',
E 'Latin America & Caribbean', 'Europe & Central Asia',
E 'Sub-Saharan Africa', 'South Asia',
E @@ -95,7 +95,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E population = data.loc[zones]['Population, total'].swaplevel().unstack()
E population = population[zones]
E assert all(data.loc['World']['Population, total'] == population.sum(axis=1))
E @@ -107,13 +107,13 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E import matplotlib.pyplot as plt
E ```
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E plt.clf()
E plt.figure(figsize=(10, 5), dpi=100)
E plt.stackplot(population.index, population.values.T / 1e9)
E @@ -135,7 +135,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E import plotly.offline as offline
E import plotly.graph_objs as go
E
E @@ -144,7 +144,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E bars = [go.Bar(x=population.index, y=population[zone], name=zone)
E for zone in zones]
E fig = go.Figure(data=bars,
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
_____________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/cat_variable.ipynb] ______________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/cat_variable.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n nbformat_minor: 2\n---\n\n::: {.cell .code}\n``` python\ncat = 42\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n nbformat_minor: 2\n---\n\n::: {.cell .code}\n``` {.python}\ncat = 42\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -9,7 +9,7 @@
E ---
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E cat = 42
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
_________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/convert_to_py_then_test_with_update83.ipynb] _________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/convert_to_py_then_test_with_update83.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = "---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...int('asdf')\n```\n:::\n\n::: {.cell .markdown}\nThanks for jupytext!\n:::\n\n::: {.cell .code}\n``` python\n```\n:::\n"
expected = "---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...('asdf')\n```\n:::\n\n::: {.cell .markdown}\nThanks for jupytext!\n:::\n\n::: {.cell .code}\n``` {.python}\n```\n:::\n"
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -9,7 +9,7 @@
E ---
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E %%time
E
E print('asdf')
E @@ -21,7 +21,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
______________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/frozen_cell.ipynb] ______________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/frozen_cell.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...l="{\\"frozen\\":true}"}\n``` python\n# This is an frozen cell\nprint("I\'m frozen so Im not executed :(")\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...{\\"frozen\\":true}"}\n``` {.python}\n# This is an frozen cell\nprint("I\'m frozen so Im not executed :(")\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -9,14 +9,14 @@
E ---
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E # This is an unfrozen cell. Works as usual.
E print("I'm a regular cell so I run and print!")
E ```
E :::
E
E ::: {.cell .code deletable="false" editable="false" run_control="{\"frozen\":true}"}
E -``` {.python}
E +``` python
E # This is an frozen cell
E print("I'm frozen so Im not executed :(")
E ```
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
________________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter.ipynb] ________________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...l .code}\n``` python\na, b, a+b\n```\n:::\n\n::: {.cell .markdown}\nAnd this is already the end of the notebook\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...code}\n``` {.python}\na, b, a+b\n```\n:::\n\n::: {.cell .markdown}\nAnd this is already the end of the notebook\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -15,7 +15,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E a = 1
E b = 2
E a + b
E @@ -27,13 +27,13 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E a, b
E ```
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E a, b, a+b
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
_____________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter_again.ipynb] _____________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter_again.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...n``` python\nimport yaml\nprint(yaml.dump(yaml.load(c)))\n```\n:::\n\n::: {.cell .code}\n``` python\n?next\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n....python}\nimport yaml\nprint(yaml.dump(yaml.load(c)))\n```\n:::\n\n::: {.cell .code}\n``` {.python}\n?next\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -9,7 +9,7 @@
E ---
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E c = '''
E title: "Quick test"
E output:
E @@ -23,14 +23,14 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E import yaml
E print(yaml.dump(yaml.load(c)))
E ```
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E ?next
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
_____________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter_with_raw_cell_in_body.ipynb] _____________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter_with_raw_cell_in_body.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...\n::: {.cell .raw}\n```{=ipynb}\nThis is a raw cell\n```\n:::\n\n::: {.cell .markdown}\nThis is a markdown cell\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...\n::: {.cell .raw}\n```{=ipynb}\nThis is a raw cell\n```\n:::\n\n::: {.cell .markdown}\nThis is a markdown cell\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -9,7 +9,7 @@
E ---
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E 1+2+3
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
_____________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter_with_raw_cell_on_top.ipynb] ______________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter_with_raw_cell_on_top.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n... console\n---\n```\n:::\n\n::: {.cell .code}\n``` python\n1+2+3\n```\n:::\n\n::: {.cell .code}\n``` python\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...le\n---\n```\n:::\n\n::: {.cell .code}\n``` {.python}\n1+2+3\n```\n:::\n\n::: {.cell .code}\n``` {.python}\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -23,13 +23,13 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E 1+2+3
E ```
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
____________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/notebook_with_complex_metadata.ipynb] _____________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/notebook_with_complex_metadata.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n nbformat_minor: 2\n---\n\n::: {.cell .code}\n``` python\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n nbformat_minor: 2\n---\n\n::: {.cell .code}\n``` {.python}\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -9,7 +9,7 @@
E ---
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/nteract_with_parameter.ipynb] _________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/nteract_with_parameter.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernel_info:\n name: python3\n kernelspec:\n display_name: Python 3\n language: python\n ...ell .code inputHidden="false" outputHidden="false"}\n``` python\n%matplotlib inline\ndf.plot(kind=\'bar\')\n```\n:::\n'
expected = '---\njupyter:\n kernel_info:\n name: python3\n kernelspec:\n display_name: Python 3\n language: python\n ... .code inputHidden="false" outputHidden="false"}\n``` {.python}\n%matplotlib inline\ndf.plot(kind=\'bar\')\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -11,19 +11,19 @@
E ---
E
E ::: {.cell .code inputHidden="false" outputHidden="false" tags="[\"parameters\"]"}
E -``` {.python}
E +``` python
E param = 4
E ```
E :::
E
E ::: {.cell .code inputHidden="false" outputHidden="false"}
E -``` {.python}
E +``` python
E import pandas as pd
E ```
E :::
E
E ::: {.cell .code inputHidden="false" outputHidden="false"}
E -``` {.python}
E +``` python
E df = pd.DataFrame({'A': [1, 2], 'B': [3 + param, 4]},
E index=pd.Index(['x0', 'x1'], name='x'))
E df
E @@ -31,7 +31,7 @@
E :::
E
E ::: {.cell .code inputHidden="false" outputHidden="false"}
E -``` {.python}
E +``` python
E %matplotlib inline
E df.plot(kind='bar')
E ```
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
_____________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/plotly_graphs.ipynb] _____________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/plotly_graphs.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...)],\n layout=go.Layout(title="bar plot"))\nfig.show()\nfig.data[0].marker = dict(color=\'purple\')\nfig\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...)],\n layout=go.Layout(title="bar plot"))\nfig.show()\nfig.data[0].marker = dict(color=\'purple\')\nfig\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -21,14 +21,14 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E import plotly.offline as offline
E offline.init_notebook_mode(connected=True)
E ```
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E import plotly.graph_objects as go
E fig = go.Figure(
E data=[go.Bar(y=[2, 3, 1])],
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/sample_rise_notebook_66.ipynb] ________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/sample_rise_notebook_66.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...:\n\n::: {.cell .markdown cell_style="center" slideshow="{\\"slide_type\\":\\"fragment\\"}"}\nMarkdown cell two\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...:\n\n::: {.cell .markdown cell_style="center" slideshow="{\\"slide_type\\":\\"fragment\\"}"}\nMarkdown cell two\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -13,7 +13,7 @@
E :::
E
E ::: {.cell .code slideshow="{\"slide_type\":\"\"}"}
E -``` {.python}
E +``` python
E 1+1
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/text_outputs_and_images.ipynb] ________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/text_outputs_and_images.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = "---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...w()\n```\n:::\n\n::: {.cell .markdown}\n# Errors\n:::\n\n::: {.cell .code}\n``` python\nundefined_variable\n```\n:::\n"
expected = "---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...\n```\n:::\n\n::: {.cell .markdown}\n# Errors\n:::\n\n::: {.cell .code}\n``` {.python}\nundefined_variable\n```\n:::\n"
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -19,7 +19,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E import sys
E print('using print')
E sys.stdout.write('using sys.stdout.write')
E @@ -28,7 +28,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E import logging
E logging.debug('Debug')
E logging.info('Info')
E @@ -44,14 +44,14 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E import pandas as pd
E pd.DataFrame([4])
E ```
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E from IPython.display import display
E display(pd.DataFrame([5]))
E display(pd.DataFrame([6]))
E @@ -63,13 +63,13 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E %matplotlib inline
E ```
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E # First plot
E from matplotlib import pyplot as plt
E import numpy as np
E @@ -95,7 +95,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E undefined_variable
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
______________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_R/ir_notebook.ipynb] _______________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_R/ir_notebook.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: R\n language: R\n name: ir\n nbformat: 4\n nbformat_minor: 2\...\n``` R\nsum(1:10)\n```\n:::\n\n::: {.cell .code}\n``` R\nplot(cars)\n```\n:::\n\n::: {.cell .code}\n``` R\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: R\n language: R\n name: ir\n nbformat: 4\n nbformat_minor: 2\...}\nsum(1:10)\n```\n:::\n\n::: {.cell .code}\n``` {.R}\nplot(cars)\n```\n:::\n\n::: {.cell .code}\n``` {.R}\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -13,19 +13,19 @@
E :::
E
E ::: {.cell .code}
E -``` {.R}
E +``` R
E sum(1:10)
E ```
E :::
E
E ::: {.cell .code}
E -``` {.R}
E +``` R
E plot(cars)
E ```
E :::
E
E ::: {.cell .code}
E -``` {.R}
E +``` R
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
_____________________________________________________________ test_jupytext_commands_in_the_documentation_work _____________________________________________________________
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_jupytext_commands_in_the_0')
@requires_black
@requires_myst
@pytest.mark.skipif(
not os.path.isdir(doc_path), reason="Documentation folder is missing"
)
def test_jupytext_commands_in_the_documentation_work(tmpdir):
# Read the documentation as a bash notebook
using_cli = os.path.join(doc_path, "using-cli.md")
assert os.path.isfile(using_cli)
using_cli_nb = jupytext.read(using_cli)
# Run the commands in tmpdir on a sample notebook
jupytext.write(
new_notebook(cells=[new_code_cell("1+1")]), str(tmpdir.join("notebook.ipynb"))
)
os.chdir(str(tmpdir))
cmd_tested = 0
for cell in using_cli_nb.cells:
if cell.cell_type != "code":
continue
if not cell.source.startswith("jupytext"):
continue
for cmd in cell.source.splitlines():
if not cmd.startswith("jupytext"):
continue
# Do not test commands that involve reading a notebook from stdin
if "read ipynb from stdin" in cmd:
continue
# We can't run pytest inside pytest
if "pytest {}" in cmd:
continue
# We need to remove the comments that may follow the jupytext command
if "#" in cmd:
left, comment = cmd.rsplit("#", 1)
if '"' not in comment:
cmd = left
print("Testing: {}".format(cmd))
args = shlex.split(cmd)[1:]
> assert not jupytext_cli(args), cmd
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_using_cli.py:58:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
Testing: jupytext --to py notebook.ipynb
[jupytext] Reading notebook.ipynb in format ipynb
[jupytext] Writing notebook.py
Testing: jupytext --to py:percent notebook.ipynb
[jupytext] Reading notebook.ipynb in format ipynb
[jupytext] Writing notebook.py in format py:percent (destination file replaced [use --update to preserve cell outputs and ids])
Testing: jupytext --to py:percent --opt comment_magics=false notebook.ipynb
[jupytext] Reading notebook.ipynb in format ipynb
[jupytext] Writing notebook.py in format py:percent (destination file replaced [use --update to preserve cell outputs and ids])
Testing: jupytext --to markdown notebook.ipynb
[jupytext] Reading notebook.ipynb in format ipynb
[jupytext] Writing notebook.md
Testing: jupytext --output script.py notebook.ipynb
[jupytext] Reading notebook.ipynb in format ipynb
[jupytext] Writing script.py
Testing: jupytext --to notebook notebook.py
[jupytext] Reading notebook.py in format py
[jupytext] Writing notebook.ipynb (destination file replaced [use --update to preserve cell outputs and ids])
Testing: jupytext --update --to notebook notebook.py
[jupytext] Reading notebook.py in format py
Testing: jupytext --to md --test notebook.ipynb
[jupytext] Reading notebook.ipynb in format ipynb
Testing: jupytext --to md --output - notebook.ipynb
---
jupyter:
jupytext:
comment_magics: false
main_language: python
text_representation:
extension: .md
format_name: markdown
format_version: '1.3'
jupytext_version: 1.13.6
---
```python
1+1Testing: jupytext --set-formats ipynb,py notebook.ipynb
[jupytext] Reading notebook.ipynb in format ipynb
[jupytext] Updating notebook metadata with '{"jupytext": {"formats": "ipynb,py"}}'
[jupytext] Updating notebook.ipynb
[jupytext] Updating notebook.py
Testing: jupytext --sync notebook.ipynb
[jupytext] Reading notebook.ipynb in format ipynb
[jupytext] Loading notebook.py
[jupytext] Updating the timestamp of notebook.py
Testing: jupytext --set-kernel - notebook.md
[jupytext] Reading notebook.md in format md
============================================================================= warnings summary =============================================================================
jupytext/cell_reader.py:20
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cell_reader.py:20: UserWarning: Sphinx Gallery in version 0.10.1 is not supported by Jupytext. Please use sphinx-gallery<=0.7.0 instead. If that is an issue, feel free to report it at https://github.com/mwouts/jupytext/issues, or even better, prepare a PR to handle the new signature of sphinx_gallery.notebook.rst2md.
warnings.warn(
tests/test_cli.py::test_format_prefix_suffix
[warning] You might have passed a file name to the '--to' option, when a format description was expected. Maybe you want to use the '-o' option instead?
tests/test_contentsmanager.py: 48 warnings
[warning] GObject.GError is deprecated; use GLib.GError instead
-- Docs: https://docs.pytest.org/en/stable/warnings.html
========================================================================= short test summary info ==========================================================================
SKIPPED [1] tests/test_auto_ext.py:36: No file_extension in language_info
SKIPPED [1] tests/test_black.py:68: autopep8 not found
SKIPPED [1] tests/test_black.py:79: flake8 not found
SKIPPED [1] tests/test_cli.py:807: sphinx_gallery is not available
SKIPPED [1] tests/test_cli.py:1231: Please run 'python -m ipykernel install --name python_kernel --user'
SKIPPED [7] tests/test_contentsmanager.py:204: quarto>=0.2 is not available
SKIPPED [1] tests/test_contentsmanager.py:1290: sphinx_gallery is not available
SKIPPED [2] tests/test_contentsmanager.py:1867: jupyterfs is not available
SKIPPED [1] tests/test_execute.py:150: irkernel is not installed
SKIPPED [1] tests/test_ipynb_to_myst.py:162: myst is available
SKIPPED [1] tests/test_ipynb_to_myst.py:171: myst is available
SKIPPED [1] tests/test_isort.py:8: isort not found
SKIPPED [7] tests/test_mirror.py:141: quarto>=0.2 is not available
SKIPPED [11] tests/test_mirror.py:168: sphinx_gallery is not available
SKIPPED [1] tests/test_mirror.py:219: sphinx_gallery is not available
SKIPPED [1] tests/test_mirror.py:225: sphinx_gallery is not available
SKIPPED [1] tests/test_pre_commit_0_ipynb_to_py.py:16: Jupytext folder is not a git repository #814
SKIPPED [1] tests/test_pre_commit_1_sync.py:17: Jupytext folder is not a git repository #814
SKIPPED [1] tests/test_pre_commit_1_sync_with_config.py:14: Jupytext folder is not a git repository #814
SKIPPED [1] tests/test_pre_commit_2_sync_nbstripout.py:14: Jupytext folder is not a git repository #814
SKIPPED [1] tests/test_pre_commit_3_sync_black_nbstripout.py:13: Jupytext folder is not a git repository #814
SKIPPED [1] tests/test_pre_commit_4_sync_execute.py:15: Jupytext folder is not a git repository #814
SKIPPED [1] tests/test_pre_commit_5_reformat_markdown.py:15: Jupytext folder is not a git repository #814
SKIPPED [1] tests/test_pre_commit_scripts.py:219: flake8 not found
SKIPPED [1] tests/test_read_empty_text_notebook.py:14: quarto is not available
SKIPPED [1] tests/test_read_simple_pandoc.py:82: Pandoc is installed
SKIPPED [1] tests/test_read_simple_quarto.py:9: quarto>=0.2 is not available
XFAIL tests/test_auto_ext.py::test_auto_from_kernelspecs_works[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_sage/sage_print_hello.ipynb]
reason: Sage notebooks have Python in their language_info metadata, see #727
FAILED tests/test_black.py::test_apply_black_through_jupytext[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/Line_breaks_in_LateX_305.ipynb] - Fi...
FAILED tests/test_cli.py::test_set_kernel_inplace[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/light_sample.py] - ValueError: No kernel found tha...
FAILED tests/test_cli.py::test_set_kernel_inplace[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/python_notebook_sample.py] - ValueError: No kernel...
FAILED tests/test_cli.py::test_set_kernel_auto[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/light_sample.py] - ValueError: No kernel found that m...
FAILED tests/test_cli.py::test_set_kernel_auto[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/python_notebook_sample.py] - ValueError: No kernel fo...
FAILED tests/test_cli.py::test_set_kernel_works_with_pipes_326 - ValueError: No kernel found that matches the current python executable /usr/bin/python3
FAILED tests/test_cli.py::test_utf8_out_331 - ValueError: No kernel found that matches the current python executable /usr/bin/python3
FAILED tests/test_cli.py::test_create_header_with_set_formats_and_set_kernel[md] - ValueError: No kernel found that matches the current python executable /usr/bin/python3
FAILED tests/test_cli.py::test_create_header_with_set_formats_and_set_kernel[md:myst] - ValueError: No kernel found that matches the current python executable /usr/bin/p...
FAILED tests/test_cli.py::test_create_header_with_set_formats_and_set_kernel[md:pandoc] - ValueError: No kernel found that matches the current python executable /usr/bin...
FAILED tests/test_cli.py::test_create_header_with_set_formats_and_set_kernel[py:light] - ValueError: No kernel found that matches the current python executable /usr/bin/...
FAILED tests/test_cli.py::test_create_header_with_set_formats_and_set_kernel[py:percent] - ValueError: No kernel found that matches the current python executable /usr/bi...
FAILED tests/test_contentsmanager.py::test_python_kernel_preserves_R_files[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/R/simple_r_script.R] - ValueErro...
FAILED tests/test_execute.py::test_execute - ValueError: No kernel found that matches the current python executable /usr/bin/python3
FAILED tests/test_execute.py::test_execute_readme_ok - ValueError: No kernel found that matches the current python executable /usr/bin/python3
FAILED tests/test_execute.py::test_execute_readme_not_ok - ValueError: No kernel found that matches the current python executable /usr/bin/python3
FAILED tests/test_execute.py::test_execute_sync - ValueError: No kernel found that matches the current python executable /usr/bin/python3
FAILED tests/test_execute.py::test_execute_in_subfolder - ValueError: No kernel found that matches the current python executable /usr/bin/python3
FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_julia/julia_benchmark_plotly_barchart.ipynb] - Asse...
FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/Notebook_with_R_magic.ipynb] - AssertionError:
FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/Notebook_with_more_R_magic_111.ipynb] - Assertio...
FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/World population.ipynb] - AssertionError:
FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/cat_variable.ipynb] - AssertionError:
FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/convert_to_py_then_test_with_update83.ipynb] - A...
FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/frozen_cell.ipynb] - AssertionError:
FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter.ipynb] - AssertionError:
FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter_again.ipynb] - AssertionError:
FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter_with_raw_cell_in_body.ipynb] - Assertion...
FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter_with_raw_cell_on_top.ipynb] - AssertionE...
FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/notebook_with_complex_metadata.ipynb] - Assertio...
FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/nteract_with_parameter.ipynb] - AssertionError:
FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/plotly_graphs.ipynb] - AssertionError:
FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/sample_rise_notebook_66.ipynb] - AssertionError:
FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/text_outputs_and_images.ipynb] - AssertionError:
FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_R/ir_notebook.ipynb] - AssertionError:
FAILED tests/test_using_cli.py::test_jupytext_commands_in_the_documentation_work - ValueError: No kernel found that matches the current python executable /usr/bin/python3
============================================= 36 failed, 2621 passed, 50 skipped, 1 xfailed, 50 warnings in 148.36s (0:02:28) ==============================================
</details>
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