STL vectors in LAPJV C++ implementation

[ms609]

Per https://github.com/yongyanghz/LAPJV-algorithm-c/tree/stl_vector_support

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 99.05%. Comparing base (254f9f3) to head (b32d8b2).
⚠️ Report is 4 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #135   +/-   ##
=======================================
  Coverage   99.04%   99.05%           
=======================================
  Files          37       37           
  Lines        2630     2641   +11     
=======================================
+ Hits         2605     2616   +11     
  Misses         25       25           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

[github-actions]

Performance benchmark results

Call	Status	Change	Time (ms)
ClusteringInfoDistance(tr200)	⚪ NSD	-0.32%	470 → 476, 470
ClusteringInfoDistance(tr50)	⚪ NSD	0.22%	369 → 367, 370
LAPJV(test2000)	🟢 Faster!	26.79%	181 → 131, 133
LAPJV(test40)	🟠 Slower 🙁	-8.41%	0.0143 → 0.0149, 0.0158
LAPJV(test400)	🟢 Faster!	20.34%	3.07 → 2.44, 2.45
MutualClusteringInfo(tr200)	⚪ NSD	-1.52%	464 → 470, 513
MutualClusteringInfo(tr50)	⚪ NSD	-0.8%	495 → 495, 503
PathDist(postTrees)	⚪ NSD	-4.72%	3.56 → 3.87, 3.67
PhylogeneticInfoDistance(tr200)	🟠 Slower 🙁	-16.36%	329 → 379, 383
PhylogeneticInfoDistance(tr50)	🟠 Slower 🙁	-5.48%	320 → 336, 340
RobinsonFoulds(tr200)	⚪ NSD	0.58%	2.82 → 2.78, 2.83
RobinsonFoulds(tr200)	⚪ NSD	0.72%	2.5 → 2.48, 2.48
RobinsonFoulds(tr50)	⚪ NSD	0.08%	4.16 → 4.09, 4.18

[github-actions]

Performance benchmark results

Call	Status	Change	Time (ms)
ClusteringInfoDistance(tr200)	⚪ NSD	-0.01%	472 → 474, 471
ClusteringInfoDistance(tr50)	🟣 ~same	-2.2%	361 → 367, 371
LAPJV(test2000)	🟢 Faster!	25.53%	179 → 134, 133
LAPJV(test40)	⚪ NSD	-3.1%	0.0145 → 0.0149, 0.015
LAPJV(test400)	🟢 Faster!	19.02%	3.06 → 2.49, 2.46
MutualClusteringInfo(tr200)	⚪ NSD	3.84%	516 → 469, 523
MutualClusteringInfo(tr50)	🟠 Slower 🙁	-5.37%	493 → 505, 522
PathDist(postTrees)	⚪ NSD	-4.59%	3.53 → 3.67, 3.7
PhylogeneticInfoDistance(tr200)	🟠 Slower 🙁	-15.7%	329 → 381, 380
PhylogeneticInfoDistance(tr50)	🟠 Slower 🙁	-5.26%	323 → 338, 341
RobinsonFoulds(tr200)	⚪ NSD	2.28%	2.87 → 2.77, 2.83
RobinsonFoulds(tr200)	⚪ NSD	4.47%	2.58 → 2.43, 2.49
RobinsonFoulds(tr50)	⚪ NSD	1.41%	4.28 → 4.16, 4.35