This is a jawm demo module.
Checkout simple.py, advanced.py and notebook.ipynb for examples on how to develop data analysis workflows with jawm.
Installing jawm:
pip install git+ssh://git@github.com/mpg-age-bioinformatics/jawm.git
For more information on jawm please visit jawm's repo on GitHub.com.
Example usage:
# clone this module
git clone git@github.com:mpg-age-bioinformatics/jawm_demo.git
# simple
cd jawm_demo
python simple.py
# simple with jawm
jawm simple.py
# download test data
jawm-test -r download
# docker
jawm advanced.py demo -p ./yaml/docker.yaml
# slurm & apptainer with multiple yaml files
jawm advanced.py demo -p ./yaml/vars.yaml ./yaml/hpc.yaml
Additional jawm workflows are available here (GitHub.com).