Add Ruff to pre-commit hooks

[chrisjonesBSU]

PR Summary:

This adds Ruff to the pre-commit hooks, like we did in GMSO and foyer

Closes #1186

PR Checklist

---

• Includes appropriate unit test(s)
• Appropriate docstring(s) are added/updated
• Code is (approximately) PEP8 compliant
• Issue(s) raised/addressed?

[codecov]

Codecov Report

Attention: Patch coverage is 81.45695% with 28 lines in your changes missing coverage. Please review.

Project coverage is 85.68%. Comparing base (a4c41c5) to head (d74671e).
Report is 2 commits behind head on main.

Files with missing lines	Patch %	Lines
mbuild/formats/cassandramcf.py	0.00%	18 Missing ⚠️
mbuild/compound.py	92.10%	3 Missing ⚠️
mbuild/formats/json_formats.py	62.50%	3 Missing ⚠️
mbuild/lib/recipes/silica_interface.py	33.33%	2 Missing ⚠️
mbuild/periodic_kdtree.py	50.00%	1 Missing ⚠️
mbuild/utils/decorators.py	0.00%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1207      +/-   ##
==========================================
- Coverage   85.73%   85.68%   -0.06%     
==========================================
  Files          53       53              
  Lines        4802     4791      -11     
==========================================
- Hits         4117     4105      -12     
- Misses        685      686       +1     

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