FBN1 update #103

	name: Phenopacket Q/C

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]

	env:
	# Path to directory that contains the cohorts, one cohort per folder.
	NOTEBOOK_DIR: notebooks

	jobs:
	run-qc:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4
	- name: Initialize Python
	uses: actions/setup-python@v4.3.1
	with:
	python-version: '3.12'
	- name: Install Phenopacket store package
	run: \|
	python3 -m pip install phenopacket-store-toolkit[release]
	- name: Run phenopacket Q/C
	run: \|
	python3 -m ppktstore qc --notebook-dir "${NOTEBOOK_DIR}"

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