Merge pull request #607 from monarch-initiative/monarch-ingest-go-mod…

…ular-update

update to move go annotations to modularized version

src/monarch_ingest/download.yaml

@@ -198,78 +198,6 @@
   local_name: data/flybase/entity_publication_fb.tsv.gz
   tag: flybase_publication_to_gene
 
-### GO
-
-# Homo sapiens (human)
-- url: http://current.geneontology.org/annotations/goa_human.gaf.gz
-  local_name: data/go/9606.go_annotations.gaf.gz
-  tag: go_annotation
-
-# Mus musculus (house mouse)
-- url: http://current.geneontology.org/annotations/mgi.gaf.gz
-  local_name: data/go/10090.go_annotations.gaf.gz
-  tag: go_annotation
-
-# Rattus norvegicus (Norway rat)
-- url: http://current.geneontology.org/annotations/rgd.gaf.gz
-  local_name: data/go/10116.go_annotations.gaf.gz
-  tag: go_annotation
-
-# Canis lupus familiaris (dog)
-- url: http://current.geneontology.org/annotations/goa_dog.gaf.gz
-  local_name: data/go/9615.go_annotations.gaf.gz
-  tag: go_annotation
-
-# Bos taurus (cow)
-- url: http://current.geneontology.org/annotations/goa_cow.gaf.gz
-  local_name: data/go/9913.go_annotations.gaf.gz
-  tag: go_annotation
-
-# Sus scrofa (pig)
-- url: http://current.geneontology.org/annotations/goa_pig.gaf.gz
-  local_name: data/go/9823.go_annotations.gaf.gz
-  tag: go_annotation
-
-# Gallus gallus (chicken)
-- url: http://current.geneontology.org/annotations/goa_chicken.gaf.gz
-  local_name: data/go/9031.go_annotations.gaf.gz
-  tag: go_annotation
-
-# Danio rerio (Zebrafish)
-- url: http://current.geneontology.org/annotations/zfin.gaf.gz
-  local_name: data/go/7955.go_annotations.gaf.gz
-  tag: go_annotation
-
-# Drosophila melanogaster (fruit fly)
-- url: http://current.geneontology.org/annotations/fb.gaf.gz
-  local_name: data/go/7227.go_annotations.gaf.gz
-  tag: go_annotation
-
-# Caenorhabditis elegans (nematodes)
-- url: http://current.geneontology.org/annotations/wb.gaf.gz
-  local_name: data/go/6239.go_annotations.gaf.gz
-  tag: go_annotation
-
-# Dictyostelium discoideum
-- url: http://current.geneontology.org/annotations/dictybase.gaf.gz
-  local_name: data/go/44689.go_annotations.gaf.gz
-  tag: go_annotation
-
-# Various species in the Aspergillus genus
-- url: http://current.geneontology.org/annotations/aspgd.gaf.gz
-  local_name: data/go/5052.go_annotations.gaf.gz
-  tag: go_annotation
-
-# Saccharomyces cerevisiae (baker's yeast)
-- url: http://current.geneontology.org/annotations/sgd.gaf.gz
-  local_name: data/go/4932.go_annotations.gaf.gz
-  tag: go_annotation
-
-# Schizosaccharomyces pombe
-- url: http://current.geneontology.org/annotations/pombase.gaf.gz
-  local_name: data/go/4896.go_annotations.gaf.gz
-  tag: go_annotation
-
 # HGNC
 -
   url: http://storage.googleapis.com/public-download-files/hgnc/tsv/tsv/hgnc_complete_set.txt

src/monarch_ingest/ingests.yaml

@@ -32,6 +32,11 @@ ncbi_gene:
 zfin_genotype_to_phenotype:
   url:
     - 'https://github.com/monarch-initiative/zfin-genotype-to-phenotype-ingest/releases/latest/download/zfin_genotype_to_phenotype_edges.tsv'
+go_annotation:
+  url:
+    - 'https://github.com/monarch-initiative/go-ingest/releases/latest/download/go_annotation_edges.tsv'
+
+
 
 ## Ingests within this repository
 
@@ -51,8 +56,6 @@ dictybase_gene:
   config: 'ingests/dictybase/gene.yaml'
 dictybase_gene_to_phenotype:
   config: 'ingests/dictybase/gene_to_phenotype.yaml'
-go_annotation:
-  config: 'ingests/go/annotation.yaml'
 hgnc_gene:
   config: 'ingests/hgnc/gene.yaml'
 panther_genome_orthologs: