Merge pull request #526 from monarch-initiative/remove-monarch-py-req…

…uirement

Remove monarch-py as a dependency to avoid incompatible dependencies between sssom-py & kgx, get the schema with curl commands instead

pyproject.toml

@@ -18,17 +18,16 @@ packages = [
 python = ">=3.10,<3.12"
 kghub-downloader = "^0.3.2"
 koza = "^0.3.0"
-cat-merge = "0.1.21"
+cat-merge = ">=0.2.0"
 closurizer = "0.3.0"
-monarch-py = "^0.15.6"
-kgx = "^2.1.0"
+kgx = ">=2.1"
 multi-indexer = "0.0.5"
 botocore = "^1.31"
 biolink-model = "3.5.0"
 linkml = "^1.5.7"
 #linkml-solr = "^0.1.3"
 linkml-solr = {git = "https://github.com/linkml/linkml-solr.git", branch = "top_class"}
-importlib-metadata = "^4.6.1"
+importlib-metadata = ">=4.6.1"
 sh = "^1.14.3"
 typer = "^0.7"
 typer-cli = "^0.0.13"

scripts/load_solr.sh

@@ -11,8 +11,10 @@ if test -f "output/monarch-kg-denormalized-edges.tsv.gz"; then
     gunzip --force output/monarch-kg-denormalized-edges.tsv.gz
 fi
 
-echo "Extracting the schema from monarch-py"
-poetry run monarch schema > model.yaml
+echo "Download the schema from monarch-py"
+# This replaces poetry run monarch schema > model.yaml
+curl -O https://raw.githubusercontent.com/monarch-initiative/monarch-app/v0.15.8/backend/src/monarch_py/datamodels/model.yaml
+curl -O https://raw.githubusercontent.com/monarch-initiative/monarch-app/v0.15.8/backend/src/monarch_py/datamodels/similarity.yaml
 
 echo "Starting the server"
 poetry run lsolr start-server