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fcs adapter
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fcs adapter channel fix on update.
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molikd authored May 28, 2024
1 parent 7cbfa50 commit 1dfa3f5
Showing 1 changed file with 1 addition and 2 deletions.
3 changes: 1 addition & 2 deletions run.nf
Original file line number Diff line number Diff line change
Expand Up @@ -548,15 +548,14 @@ process simple_fcs_adaptor {
input:
file genome from shhquis_simple_ch
output:
file 'cleaned_sequences/*.fa' into simple_fcs_adaptor_ch
file 'cleaned_sequences/*' into simple_fcs_adaptor_ch
file '*'
stdout simple_fcs_adaptor_output
when:
params.polishtype == "simple"
"""
touch dv_fcs_adaptor.flag.txt
/app/fcs/bin/av_screen_x -o . --euk ${genome}
gzip -d cleaned_sequences/*.fa.gz
echo "finished simple fcs adaptor"
sleep 120;
exit 0;
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