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TEST-#7166: Fix HDF tests in CI #7167

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Apr 11, 2024
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TEST-#7166: Fix HDF tests in CI #7167

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TEST-#7166: Fix HDF tests in CI
anmyachev Apr 10, 2024
105ed3c
pin c-blosc2<=2.14.1
anmyachev Apr 10, 2024
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2 changes: 2 additions & 0 deletions .github/workflows/ci.yml
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Expand Up @@ -676,6 +676,8 @@ jobs:
- uses: ./.github/actions/mamba-env
with:
environment-file: environment-dev.yml
- name: Install HDF5
run: sudo apt update && sudo apt install -y libhdf5-dev
- run: python -m pytest -n 2 modin/tests/pandas/dataframe/test_map_metadata.py
- run: python -m pytest -n 2 modin/tests/pandas/test_series.py
# Do not add parallelism (`-n` argument) here - it will cause mock S3 service to fail.
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1 change: 1 addition & 0 deletions environment-dev.yml
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Expand Up @@ -31,6 +31,7 @@ dependencies:
- sqlalchemy>=2.0.0
- pandas-gbq>=0.19.0
- pytables>=3.8.0
- c-blosc2<=2.14.1
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Should we also update requirements-dev.txt?

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@anmyachev anmyachev Apr 10, 2024 •
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I think this is not necessary, we just need the tests in CI to work as quickly as possible, I believe that either pytables or c-blosc2 will release their new patches to make everything work (fast enough). Also, I'm not sure if this error is present when installing using pip.

# pymssql==2.2.8 broken: https://github.com/modin-project/modin/issues/6429
- pymssql>=2.1.5,!=2.2.8
- psycopg2>=2.9.6
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1 change: 1 addition & 0 deletions requirements/env_hdk.yml
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Expand Up @@ -21,6 +21,7 @@ dependencies:
- matplotlib>=3.6.3
- xarray>=2022.12.0
- pytables>=3.8.0
- c-blosc2<=2.14.1
- fastparquet>=2022.12.0
# pandas isn't compatible with numexpr=2.8.5: https://github.com/modin-project/modin/issues/6469
- numexpr<2.8.5
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1 change: 1 addition & 0 deletions requirements/env_unidist_linux.yml
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Expand Up @@ -26,6 +26,7 @@ dependencies:
- sqlalchemy>=2.0.0
- pandas-gbq>=0.19.0
- pytables>=3.8.0
- c-blosc2<=2.14.1
# pymssql==2.2.8 broken: https://github.com/modin-project/modin/issues/6429
- pymssql>=2.1.5,!=2.2.8
- psycopg2>=2.9.6
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1 change: 1 addition & 0 deletions requirements/env_unidist_win.yml
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Expand Up @@ -26,6 +26,7 @@ dependencies:
- sqlalchemy>=2.0.0
- pandas-gbq>=0.19.0
- pytables>=3.8.0
- c-blosc2<=2.14.1
# pymssql==2.2.8 broken: https://github.com/modin-project/modin/issues/6429
- pymssql>=2.1.5,!=2.2.8
- psycopg2>=2.9.6
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1 change: 1 addition & 0 deletions requirements/requirements-no-engine.yml
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Expand Up @@ -23,6 +23,7 @@ dependencies:
- sqlalchemy>=2.0.0
- pandas-gbq>=0.19.0
- pytables>=3.8.0
- c-blosc2<=2.14.1
- tqdm>=4.60.0
# pandas isn't compatible with numexpr=2.8.5: https://github.com/modin-project/modin/issues/6469
- numexpr<2.8.5
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