fix split strings (presumably from autoformatter) (#965)

docs/source/examples/gen_examples.py

@@ -225,9 +225,7 @@ def _gen_demonstrated_funcs(example_config_path: Path) -> dict:
         assert "mne" in options
         url = f"https://mne.tools/dev/generated/mne.datasets.{options['mne']}.data_path.html"  # noqa: E501
 
-    source_str = (
-        f"## Dataset source\n\nThis dataset was acquired from " f"[{url}]({url})\n"
-    )
+    source_str = f"## Dataset source\n\nThis dataset was acquired from [{url}]({url})\n"
 
     if "openneuro" in options:
         for key in ("include", "exclude"):

docs/source/v1.9.md.inc

@@ -57,3 +57,4 @@
 ### :medical_symbol: Code health and infrastructure
 
 - Use GitHub's `dependabot` service to automatically keep GitHub Actions up-to-date. (#893 by @hoechenberger)
+- Clean up some strings that our autoformatter failed to correctly merge. (#965 by @drammock)

mne_bids_pipeline/_config_template.py

@@ -24,7 +24,7 @@ def create_template_config(
             config.append(line)
 
     target_path.write_text("".join(config), encoding="utf-8")
-    message = f"Successfully created template configuration file at: " f"{target_path}"
+    message = f"Successfully created template configuration file at: {target_path}"
     logger.info(**gen_log_kwargs(message=message, emoji="✅"))
 
     message = "Please edit the file before running the pipeline."

mne_bids_pipeline/_config_utils.py

@@ -250,7 +250,7 @@ def get_runs(
         inclusion = set(runs).issubset(set(valid_runs))
         if not inclusion:
             raise ValueError(
-                f"Invalid run. It can be a subset of {valid_runs} but " f"got {runs}"
+                f"Invalid run. It can be a subset of {valid_runs} but got {runs}"
             )
     return runs
 

mne_bids_pipeline/_import_data.py

@@ -137,7 +137,7 @@ def make_epochs(
         try:
             idx_keep = epochs.metadata.eval(metadata_query, engine="python")
         except pandas.core.computation.ops.UndefinedVariableError:
-            msg = f"Metadata query failed to select any columns: " f"{metadata_query}"
+            msg = f"Metadata query failed to select any columns: {metadata_query}"
             logger.warn(**gen_log_kwargs(message=msg))
             return epochs
 
@@ -327,7 +327,7 @@ def _set_eeg_montage(
     """
     montage = cfg.eeg_template_montage
     if cfg.datatype == "eeg" and montage:
-        msg = f"Setting EEG channel locations to template montage: " f"{montage}."
+        msg = f"Setting EEG channel locations to template montage: {montage}."
         logger.info(**gen_log_kwargs(message=msg))
         raw.set_montage(montage, match_case=False, match_alias=True)
 

mne_bids_pipeline/_parallel.py

@@ -76,7 +76,7 @@ def setup_dask_client(*, exec_params: SimpleNamespace) -> None:
     client.auto_restart = False  # don't restart killed workers
 
     dashboard_url = client.dashboard_link
-    msg = "Dask client dashboard: " f"[link={dashboard_url}]{dashboard_url}[/link]"
+    msg = f"Dask client dashboard: [link={dashboard_url}]{dashboard_url}[/link]"
     logger.info(**gen_log_kwargs(message=msg, emoji="🌎"))
 
     if exec_params.dask_open_dashboard:

mne_bids_pipeline/_report.py

@@ -307,9 +307,7 @@ def _plot_time_by_time_decoding_scores_gavg(*, cfg, decoding_data):
 
         # Only add the label once
         if n_significant_clusters_plotted == 0:
-            label = (
-                f"$p$ < {cfg.cluster_permutation_p_threshold} " f"(cluster pemutation)"
-            )
+            label = f"$p$ < {cfg.cluster_permutation_p_threshold} (cluster pemutation)"
         else:
             label = None
 

mne_bids_pipeline/_run.py

@@ -63,9 +63,7 @@ def __mne_bids_pipeline_failsafe_wrapper__(*args, **kwargs):
                     for k in ("subject", "session", "task", "run")
                     if k in kwargs
                 }
-                message = (
-                    f"A critical error occurred. " f"The error message was: {str(e)}"
-                )
+                message = f"A critical error occurred. The error message was: {str(e)}"
                 log_info["success"] = False
                 log_info["error_message"] = str(e)
 

mne_bids_pipeline/steps/preprocessing/_04_frequency_filter.py

@@ -109,11 +109,11 @@ def bandpass_filter(
 ) -> None:
     """Filter data channels (MEG and EEG)."""
     if l_freq is not None and h_freq is None:
-        msg = f"High-pass filtering {run_type} data; lower bound: " f"{l_freq} Hz"
+        msg = f"High-pass filtering {run_type} data; lower bound: {l_freq} Hz"
     elif l_freq is None and h_freq is not None:
-        msg = f"Low-pass filtering {run_type} data; upper bound: " f"{h_freq} Hz"
+        msg = f"Low-pass filtering {run_type} data; upper bound: {h_freq} Hz"
     elif l_freq is not None and h_freq is not None:
-        msg = f"Band-pass filtering {run_type} data; range: " f"{l_freq} – {h_freq} Hz"
+        msg = f"Band-pass filtering {run_type} data; range: {l_freq} – {h_freq} Hz"
     else:
         msg = f"Not applying frequency filtering to {run_type} data."
 

mne_bids_pipeline/steps/sensor/_02_decoding_full_epochs.py

@@ -215,7 +215,7 @@ def run_epochs_decoding(
                 "contrast",
                 "decoding",
                 *[
-                    f"{_sanitize_cond_tag(cond_1)}–" f"{_sanitize_cond_tag(cond_2)}"
+                    f"{_sanitize_cond_tag(cond_1)}–{_sanitize_cond_tag(cond_2)}"
                     for cond_1, cond_2 in cfg.contrasts
                 ],
             ),

mne_bids_pipeline/steps/sensor/_05_decoding_csp.py

@@ -392,7 +392,7 @@ def _fmt_contrast(cond1, cond2, fmin, fmax, freq_range_name, tmin=None, tmax=Non
                     f_min = float(freq_bin[0])
                     f_max = float(freq_bin[1])
                     contrast_names.append(
-                        f"{freq_range_name}\n" f"({f_min:0.1f}-{f_max:0.1f} Hz)"
+                        f"{freq_range_name}\n({f_min:0.1f}-{f_max:0.1f} Hz)"
                     )
             fig, caption, _ = _plot_full_epochs_decoding_scores(
                 contrast_names=contrast_names,