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Commits on Nov 4, 2023

• remove multipanelfigure links

  zhewa

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Commits on Mar 28, 2022

• Added subsampling parameters for perplexity calculation to recursive split functions

  joshua-d-campbell

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Commits on Mar 25, 2022

• Moved Matrix and SingleCellExperiment to Depends to make sure these are loaded when using celda

  joshua-d-campbell

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Commits on May 11, 2021

• add displayName to featureModuleTable. Remove stringi

  zhewa

  committed
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Commits on May 2, 2021

• fix error. Add alpha arg to perplexity plots

  zhewa

  committed
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Commits on Apr 27, 2021

• Merge branch 'devel' of github.com:campbio/celda into devel

  zhewa

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Commits on Apr 20, 2021

• replace setReplaceMethod. Remove findMarkersTree, getDecisions

  zhewa

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Commits on Apr 6, 2021

• Refactored matrix multiplication with sparse matrices to a separate function. Fixed unit tests and one bug in recursiveModuleSplit

  joshua-d-campbell

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Commits on Apr 5, 2021

• Fixed numeric matrix computations in celda_C. Added ability to use numeric and sparse matrices in celda_G and celda_CG

  joshua-d-campbell

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Commits on Mar 30, 2021

• updated docs

  joshua-d-campbell

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Commits on Mar 22, 2021

• Fixed documentation for reportCeldaCG functins

  joshua-d-campbell

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Commits on Mar 17, 2021

• add reorderCelda for sce objects

  zhewa

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Commits on Mar 15, 2021

• Modified report functions and rmarkdown

  joshua-d-campbell

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Commits on Oct 13, 2020

• upgrade probabilityMap

  zhewa

  committed
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Commits on Oct 10, 2020

• update celdatosce, celda.rmd

  zhewa

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Commits on Sep 29, 2020

• update doc

  zhewa

  committed
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Commits on Sep 16, 2020

• multiple moduleHeatmap on same page. remove blank page

  zhewa

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Commits on Jul 13, 2020

• add altExpName = "featureSubset". Store results in altExp(sce)

  zhewa

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Commits on Jun 17, 2020

• add splitModule, a function to manually split feature module

  zhewa

  committed
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Commits on Jun 1, 2020

• add plotGridSearchPerplexityDiff, add as.matrix(counts) to .processCounts

  zhewa

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Commits on May 21, 2020

• update docs

  zhewa

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Commits on May 12, 2020

• selectBestModel

  zhewa

  committed
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• celdatosce subsetCeldaList

  zhewa

  committed
  2ec6775

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• sce celdaGridSearch

  zhewa

  committed
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Commits on May 10, 2020

• sce celdaGridSearch update docs

  zhewa

  committed
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Commits on Apr 7, 2020

• Merge branch 'master' of https://github.com/campbio/celda into sce

  zhewa

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Commits on Apr 6, 2020

• Finalized DecontX expression violin plot function and vignette.

  joshua-d-campbell

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Commits on Apr 2, 2020

• Major updates to DecontX. Developed new barplot and UMAP functions. Changed initialization to use UMAP from scater. Updated docs. Modified DexontX vignette to analyze PBMC4k. Added function to find…

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  joshua-d-campbell

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Commits on Mar 21, 2020

• rewrite celda_C to S4 dispatcher methods

  zhewa

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Commits on Mar 13, 2020

• Merged findMarkersTree

  joshua-d-campbell

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• merged vignette fixes

  joshua-d-campbell

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Commits on Mar 10, 2020

• still decontx plot etc

  Irisapo

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Commits on Mar 5, 2020

• fix bug

  zhewa

  committed
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Commits on Mar 2, 2020

• Updated docs. Fixed package referncing in celdaMarkerPlot. Updated DESCRIPTION.

  joshua-d-campbell

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Commits on Mar 1, 2020

• check whether ringo imports biocneighbors

  Irisapo

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