Replace BuildTreeHybrid with FindMarkers. This adds functionality to …

…generate decision tree with a priori meta clusters
mingl1997 · May 22, 2019 · fa60334 · fa60334
1 parent 3a9d257
commit fa60334
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Showing 10 changed files with 355 additions and 223 deletions.
diff --git a/NAMESPACE b/NAMESPACE
@@ -3,7 +3,6 @@
 export(appendCeldaList)
 export(availableModels)
 export(bestLogLikelihood)
-export(buildTreeHybrid)
 export(celda)
 export(celdaGridSearch)
 export(celdaHeatmap)
@@ -24,6 +23,7 @@ export(distinctColors)
 export(factorizeMatrix)
 export(featureModuleLookup)
 export(featureModuleTable)
+export(findMarkers)
 export(geneSetEnrich)
 export(getDecisions)
 export(logLikelihood)
@@ -91,6 +91,7 @@ import(grDevices)
 import(graphics)
 import(grid)
 import(gridExtra, except = c(combine))
+import(magrittr)
 import(stats, except = c(start, end))
 importFrom(MAST,FromMatrix)
 importFrom(MAST,summary)

diff --git a/R/buildTreeHybrid.R b/R/buildTreeHybrid.R