FIX: name output as "h5ad", not "loom"

milescsmith · Aug 15, 2023 · 30b2f68 · 30b2f68
1 parent 27239bc
commit 30b2f68
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "velocyto"
-version = "0.30.0"
+version = "0.30.1"
 description = "RNA velocity analysis for single cell RNA-seq data"
 authors = ["Linnarsson Lab <sten.linnarsson@ki.se>"]
 license = "BSD-2-Clause"

diff --git a/src/velocyto/commands/_run.py b/src/velocyto/commands/_run.py
@@ -219,7 +219,7 @@ def _run(
     #     ca[key] = np.full(len(cell_bcs_order), value)
 
     # Save to loom file
-    outfile = outputfolder.joinpath(f"{sampleid}.loom")
+    outfile = outputfolder.joinpath(f"{sampleid}.h5ad")
     logger.debug(f"Generating output file {outfile}")
 
     # row attributes